YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG3149-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.63
Transmembrane Helix	10	34	0.80
Non-Cytoplasmic	35	41	0.52
Transmembrane Helix	42	60	0.56
Cytoplasmic	61	88	0.86
Transmembrane Helix	89	108	0.96
Non-Cytoplasmic	109	123	0.82
Transmembrane Helix	124	146	0.85
Cytoplasmic	147	155	0.68
Transmembrane Helix	156	176	0.86
Non-Cytoplasmic	177	184	0.74
Transmembrane Helix	185	207	0.89
Cytoplasmic	208	353	0.99
Transmembrane Helix	354	376	0.88
Non-Cytoplasmic	377	397	0.90
Transmembrane Helix	398	420	0.87
Cytoplasmic	421	430	0.87
Transmembrane Helix	431	450	0.93
Non-Cytoplasmic	451	456	0.67
Transmembrane Helix	457	476	0.89
Cytoplasmic	477	491	0.82
Transmembrane Helix	492	512	0.92
Non-Cytoplasmic	513	517	0.82
Transmembrane Helix	518	539	0.92
Cytoplasmic	540	556	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARNVLESSL LGAGFSIIFQ ILCRILTFGI NAYIVRHVGR EVLGIMNVRL LLLESTLLFL  60
   61 SREAINRAAL SANAQQGDRC SWAQLINQMW LTVPICAVLC APCLYIWLNW LSAVDAIYAS 120
  121 QYEFACYAVA FSCVLELMAE SAVFVAQVFC FVKLKILLNT LHILVRSAIF LWIVTGDRSA 180
  181 AINAFAIAQL SSAVTIVLGQ YGFFYFYLKG FKDFVTQQAK KKPVAPKAWQ VSLYEHMDDF 240
  241 PFKQLSDFLP GVMFNPNGKH FNRELQTLTL SFVKQGVLKQ ILTEGEKYVM SVSPVLSFGE 300
  301 QATYDVVNNL GSMAARFIFR PIEDSSYFYF TQTLSRDIKL AKQPQERVRQ ASSVLNNLLL 360
  361 GVSSIGLIAF TFGQSYSYPV LLLYGGPDFV AGGLPQSLLQ WHCLAIYLLA VNGISEGYMF 420
  421 ATNTSRDIDK YNYLMAIFSV SFLVLSYILT GIFGPVGFIF ANCINMLSRI LYSTYYIRHQ 480
  481 YRPLSLDPLL GLWPGKLFGC TLFLAGIVCY WYQSSDLATH LGVGVLAGLA CLLSWALAHR 540
  541 DLVRLAWRYG RRIKIE