YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG6927-PA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEWSLIISIL LNCLYASASA LDEDCPTLDD GDSLSQTQLL DRLTHGCRYD RLERPITYSE  60
   61 TGQRLPVDVY MRAYIYFMQN LEAHDLQFKI YALLQMRYLD PRLNFRNVSP KRRQPILGEE 120
  121 HLRNSLWMPH IFLANERDSS ILGLTEKDIL TSISPDGTVI VSNRIKATLY CWLNLKKFPF 180
  181 DEQHCSTVLE SWMYNTSELV LHWEQKRPIT YDGALHLTEF VLQRSWSNET VINADLSDLR 240
  241 HGAFAGNYSS LSFTVHLTRV VGFYLMDYFL PSMLIVAISW VSFWLQADQA PPRITLGTST 300
  301 LLTFITLASA QGKTLPKVSY IKVSEVWFLG CTIFIFGSMV EFAFVNTIWR RKKSVPVKKL 360
  361 NSKHILKSTL SPNLLRRRSH ARSRSFSGTA LHKTADTGSL GGAGFNNYLT VNLPITTIKE 420
  421 GQVLDQQRTS RVVQKMDVNF VESAFGSMGS AQSTGAISAA SSSQTLTNNN RTESAGHQEE 480
  481 IDLSGWTTLT PQEIAMWIDS RARFVFPLSF LVFNLFFWTF VYCI

Type	Start	End	Confidence
Signal Peptide	1	20	0.95
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	259	0.99
Transmembrane Helix	260	284	0.87
Cytoplasmic	285	293	0.82
Transmembrane Helix	294	312	0.92
Non-Cytoplasmic	313	325	0.84
Transmembrane Helix	326	349	0.90
Cytoplasmic	350	503	0.97
Transmembrane Helix	504	522	0.95
Non-Cytoplasmic	523	524	0.84