YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22831708, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSISRISRYG NVAPRTTLGR IVTLAYAFFG IPLTLVYLSS TGSILARVAR EVFSKALCCC  60
   61 LCSNCGYCCY DEKRMAEKER RMRRKRQQEE LRKQQAVMQE PYYVRDVFHA TPEKDAGAGA 120
  121 PPPNAGGPVG SVGGLGDIDS LSASESRGSM HGLSILAPIL LCFSMMIIYI VFGAAVLYRL 180
  181 EKWPILDGIY FCFMSLSTIG FGDMLPGLRR ESNATTWFCS VYIMSGMTLT AMCFNVIHEE 240
  241 IVHRIRIVVE FKKTSAANSG GGLIGGGSVS GGAGGAGGSM MDVAHEEDTP TSLVLKDYVN 300
  301 HELVPILTMD PNGARLAPTP APAYTPANTS TGMPGSGEVT TPGNSCIAHG SDPGLGYSSL 360
  361 SSPLLDVMNT PTGANASGVY TLAEETELEL QETQVDRERI

Type	Start	End	Confidence
Cytoplasmic	1	16	0.87
Transmembrane Helix	17	38	0.86
Non-Cytoplasmic	39	152	0.60
Transmembrane Helix	153	178	0.85
Cytoplasmic	179	184	0.51
Transmembrane Helix	185	207	0.85
Non-Cytoplasmic	208	213	0.56
Transmembrane Helix	214	237	0.88
Cytoplasmic	238	258	0.56
Transmembrane Helix	259	277	0.43
Non-Cytoplasmic	278	400	0.63