YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG6978-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.95
Transmembrane Helix	42	60	0.87
Non-Cytoplasmic	61	98	0.85
Transmembrane Helix	99	120	0.85
Cytoplasmic	121	127	0.70
Transmembrane Helix	128	147	0.84
Non-Cytoplasmic	148	157	0.56
Transmembrane Helix	158	178	0.68
Cytoplasmic	179	189	0.74
Transmembrane Helix	190	213	0.83
Non-Cytoplasmic	214	222	0.75
Transmembrane Helix	223	242	0.96
Cytoplasmic	243	277	0.90
Transmembrane Helix	278	296	0.82
Non-Cytoplasmic	297	327	0.82
Transmembrane Helix	328	348	0.89
Cytoplasmic	349	359	0.81
Transmembrane Helix	360	381	0.79
Non-Cytoplasmic	382	384	0.57
Transmembrane Helix	385	404	0.87
Cytoplasmic	405	414	0.72
Transmembrane Helix	415	438	0.88
Non-Cytoplasmic	439	452	0.80
Transmembrane Helix	453	473	0.95
Cytoplasmic	474	479	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDTAGVYDS KGVSNRNRSD QEVRMERYAS DGQIPRCRKT RFFVVLMLFS GMANAYVMRT  60
   61 NMSVAIVAMV NHTAISHTKS STQSKERDGD FEWSYKLQGY ILSSFFYGYV ITQIPFGLMI 120
  121 KYYGARHFLG WGMMINSLAA FFIPISARSG GVVGLCVVRF IQGLGEGPIV PCSHSLLAQW 180
  181 VPPNERSLAG AAVYAGAQFG TIVSMPLSGL LAHYGFDGGW PSIFYIFGLF STIWCIIFIC 240
  241 LVQESPAVST RISEAERRHI MEAIWQAQPE ERSRIPFLGI AKSPPFYAIL VAHAGHNYGY 300
  301 ETLMTMLPTY MYRVLNVNIR TNGIISSLPY LAMWILAIVF GILADCLIRR NFSITVVRKL 360
  361 MNSLGQYGPA VALISVGFVH HSLWLTSVIF ILGMGLNGAI YCGFKINHLD LSPRFAGLLI 420
  421 SVTNCVANLV GLMAPMVAGH VIDPKPSVEN WRIVFYIAAG VFIFTASFYN VFASGKQQW