YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG3078-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	52	0.99
Transmembrane Helix	53	75	0.87
Non-Cytoplasmic	76	101	0.87
Transmembrane Helix	102	124	0.87
Cytoplasmic	125	251	0.99
Transmembrane Helix	252	272	0.91
Non-Cytoplasmic	273	291	0.81
Transmembrane Helix	292	312	0.89
Cytoplasmic	313	319	0.81
Transmembrane Helix	320	341	0.89
Non-Cytoplasmic	342	346	0.76
Transmembrane Helix	347	368	0.89
Cytoplasmic	369	413	0.94
Transmembrane Helix	414	434	0.85
Non-Cytoplasmic	435	513	0.92
Transmembrane Helix	514	534	0.94
Cytoplasmic	535	550	0.88
Transmembrane Helix	551	569	0.88
Non-Cytoplasmic	570	580	0.73
Transmembrane Helix	581	606	0.81
Cytoplasmic	607	619	0.77
Transmembrane Helix	620	640	0.94
Non-Cytoplasmic	641	647	0.91
Transmembrane Helix	648	672	0.84
Cytoplasmic	673	686	0.79
Transmembrane Helix	687	705	0.91
Non-Cytoplasmic	706	710	0.76
Transmembrane Helix	711	728	0.93
Cytoplasmic	729	743	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSLPNLHEL EEAERKREKR REYELLLEQR ARDTSRERER LSAFAQQRKQ SSYNAYIMAG  60
   61 LGIGGGSLSL NATSGTATGN GELLGGNGTT GGKGPNQAVG PASGLATSSG APVATSGFAM 120
  121 LGLGKKYAPH SHHHQHQHQH QHQHQHHQHR HSLTTRHRVL RTRSSGGAQN VWEEQMMEHF 180
  181 TTYSPSPIST RSHRINPVSS YQVQAALAAS RRRESINSSI GATSIRRLIT LNNRNCRHKV 240
  241 PAHVRQKVWR QFSCLSLAHG LMNCVLLPVM ALQGSNAVWH HREEWLPLGP EVGSLLLSAL 300
  301 FLVAAGMSLP SIRLMKRYGY GPLIVANYMT VLLFLLSHLY ASIYTLLPAY LLLGMTLSGS 360
  361 AGSKAALIVH FGGKLSCSCD SQQSQAAVDV LHEEHKMFCN RDQKVRRLAR WFRVSQDLGL 420
  421 IGGALLASIL LACSDGNFTG DCSGLVYYGN ESWPPQLRDF YNRNEHGDRI CGADMCPLRV 480
  481 QSILEAGWAN GSSIPSSIYA GFIESEPRVA GQSLLWLYVL FSMVSLTLSL LIVVDKVQAI 540
  541 GSSRPERSRD VSITDTLLFA GPLAYFVGTE QAYMMGDFLR AFVTCSLGIG MIAGALIGMG 600
  601 LMQLIVSCTL SMLLRHVKRI VVILAGFFFH SCLLLALSSW KPSSDDSALF YVIAASWGAC 660
  661 NGMWETLLLS LVTLNHSSHV TEVQAPLLAL RFLGLGLTFA GHGFLCESMK IIALVVLLVI 720
  721 SVPPYATLEI RLEAQRKATL VSL