YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	tw-PA, FBpp0307386
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	35	0.90
Transmembrane Helix	36	56	0.87
Non-Cytoplasmic	57	89	0.78
Transmembrane Helix	90	109	0.72
Cytoplasmic	110	124	0.83
Transmembrane Helix	125	146	0.80
Non-Cytoplasmic	147	173	0.67
Transmembrane Helix	174	193	0.83
Cytoplasmic	194	208	0.65
Transmembrane Helix	209	226	0.86
Non-Cytoplasmic	227	227	0.37
Transmembrane Helix	228	250	0.72
Cytoplasmic	251	262	0.65
Transmembrane Helix	263	285	0.87
Non-Cytoplasmic	286	572	0.80
Transmembrane Helix	573	595	0.93
Cytoplasmic	596	662	0.96
Transmembrane Helix	663	681	0.90
Non-Cytoplasmic	682	687	0.77
Transmembrane Helix	688	709	0.91
Cytoplasmic	710	715	0.90
Transmembrane Helix	716	739	0.86
Non-Cytoplasmic	740	765	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASVVKTPK CPRRGSVKDV AQNAPRTAPT SSKEANWNWW LLLATVFLVT FATRFYKVTE  60
   61 PDHICWDETH FGKMGSWYIN RTFFFDVHPP LGKMLIGLSG YLTGYNGTFP FEKPGDKYNE 120
  121 TRYQGMRYFC TTLGALIMPM GFDTVYDLTR SHEAALLAAA YLIFDVGLLT LNQYILLDPI 180
  181 LLFFMMASVW GMVKVSKSTA SGGSYGLRWW LWLFLTGTML SCTISVKFVG LFVVLLVGLH 240
  241 TATELWLILG DLGQPILETV KQLACRAITL IVWPVLLYIL FFYIHLSVLN RSGNGDGFYS 300
  301 SAFQSRLIGN SLYNASMPRD VAYGSLVTIK NHKTGGGYLH SHHHLYPKGS GARQQQVTTY 360
  361 THKDENNKWL IRPHNKPGPP KGKVQILRHG DLVRLTHMAT RRNLHSHNEP APMTKKHLQV 420
  421 TGYGELGLGD ANDVWRVLIV GGKVNETVHT VTSRLKFIHL LQNCALTSSG KQLPKWGFEQ 480
  481 QEVSCNPNVR DKNSQWNVED NEHKLMPSVS FSVYAPGFFA RFLESHAVML QGNAGLKPKE 540
  541 GEVTSRPWQW PINYRGQFFS GSSYRIYLLG NPLIWWSNLV FLALFVTVFL CNAVVQQRRA 600
  601 GFARSAAQNQ AQVPDSETVA QDEESEHSTT DICSCCTPAK EIVPKAVPSG SPEAPNPAQS 660
  661 LRAAAWLFLG WMLHYLPFWA MGRVLYFHHY FPALIFNSLL TGVMYNYILR VLPKWIHHVI 720
  721 LGLVLSILVY SFAAFSPLAY GMSGPLANEP NSTMYNLKWL STWEF