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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: FBpp0311070, svr-PB
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTLGLLFAS IGIAVLAMGV PHCRGYTIKE DESFLQQPHY ASQEQLEDLF AGLEKAYPNQ  60
   61 AKVHFLGRSL EGRNLLALQI SRNTRSRNLL TPPVKYIANM HGDETVGRQL LVYMAQYLLG 120
  121 NHERISDLGQ LVNSTDIYLV PTMNPDGYAL SQEGNCESLP NYVGRGNAAN IDLNRDFPDR 180
  181 LEQSHVHQLR AQSRQPETAA LVNWIVSKPF VLSANFHGGA VVASYPYDNS LAHNECCEES 240
  241 LTPDDRVFKQ LAHTYSDNHP IMRKGNNCND SFSGGITNGA HWYELSGGMQ DFNYAFSNCF 300
  301 ELTIELSCCK YPAASTLPQE WQRNKASLLQ LLRQAHIGIK GLVTDASGFP IADANVYVAG 360
  361 LEEKPMRTSK RGEYWRLLTP GLYSVHASAF GYQTSAPQQV RVTNDNQEAL RLDFKLAPVE 420
  421 TNFDGNFRKV KVERSEPPQK LKKQFNGFLT PTKYEHHNFT AMESYLRAIS SSYPSLTRLY 480
  481 SIGKSVQGRD LWVLEIFATP GSHVPGVPEF KYVANMHGNE VVGKELLLIL TKYMLERYGN 540
  541 DDRITKLVNG TRMHFLYSMN PDGYEISIEG DRTGGVGRAN AHGIDLNRNF PDQYGTDRFN 600
  601 KVTEPEVAAV MNWTLSLPFV LSANLHGGSL VANYPFDDNE NDFNDPFMRL RNSSINGRKP 660
  661 NPTEDNALFK HLAGIYSNAH PTMYLGQPCE LFQNEFFPDG ITNGAQWYSV TGGMQDWNYV 720
  721 RAGCLELTIE MGCDKFPKAA ELSRYWEDHR EPLLQFIEQV HCGIHGFVHS TIGTPIAGAV 780
  781 VRLDGANHST YSQVFGDYWK LALPGRHNLT VLGDNYAPLR MEVEVPDVHP FEMRMDITLM 840
  841 PDDPQHWASA NDFRIIENVV NTRYHTNPQV RARLAELENQ NGQIASFGYA DSEFGTIFNY 900
  901 LKMTSDIGEP EEHKYKLLVV SSLYDTTAPL GREILLNLIR HLVEGFKLQD TSVVELLKRS 960
  961 VIYFLPQTSK FQNVFDMYNS NTSICDPVLG DELAERILGP ETDQAKDVFL QFLRSERFDL1020
 1021 MLTFGAGNSD LNYPKGDSVL VKFAHRMQRT EFNYSPLQCP PSATRQLHRE TTERLTNMMY1080
 1081 RIYNLPVYTL GISCCRMPHQ KKIASVWRKN IDKIKNFLAL VKTGVSGLVQ NDKGQPLREA1140
 1141 YVRLLEHDRI INVTKNVARF QLMLPHGLYG LEVTAPNYES QMIKVDVEDG RVTELGIIRM1200
 1201 HPFTLIRGVV LELPNNDNRA TTSIAGVVLD ESNHPVRNAK VSVVGQTQLR NFTGSMGQYR1260
 1261 ISAVPLGTIT LKVEAPRHLE ATRQMHLIQG GLATENVVFH LKVNEHVFGL PRFLFILCAS1320
 1321 VLIIVGVIVC VLCAQFWFYR RHRGDKPYYN FSLLPQRGKE QFGLEDDDGG DDGETELFRS1380
 1381 PIKRELSQRA HLVNNQTNYS FIIQAA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle