YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG32000-PC
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVCGYRRSL MRTGFCWACI FLTGGLLRLV LHWWRHLYLY ATCSQCSLEE AEQVLVTEDY  60
   61 QGKHKMYHVK QIQVLTSSNL KTLLEKEQQS IERTHIECDH VENVLQLSVH FTSAQFKKCS 120
  121 SIRIFRCKQL VYAWNNNTNR FQRINGLDLN IPCSYYHQQR GLPVHEQISR RIVFGDNEIT 180
  181 VPLRDFKTLL FLEVLNPFYV FQLFSVILWF TYDYYYYACV ILLMSVFGIT VSVLQTKKNQ 240
  241 DVLQKTVYNT GNAWVVDHKG LSKELPTRAI VPGDIIEIPS SGCTLHCDAI LISGNCILDE 300
  301 SMLTGESVPV TKTPLPSKRD MIFDKTEHAR HTLFCGTKVI QTRYIGSKKV LAFVINTGNI 360
  361 TAKGELIRSI LYPPPVDYKF EQDSYKFIQF LAIIACVGFI YTLVTKILRG TDPVKIAVES 420
  421 LDLITIVVPP ALPAAMTVGR FYAQKRLKTS EIFCISPRSI NVAGSINCCC FDKILKYSIL 480
  481 RERRERAILA VTKKVSA

Type	Start	End	Confidence
Cytoplasmic	1	12	0.62
Transmembrane Helix	13	32	0.90
Non-Cytoplasmic	33	213	0.66
Transmembrane Helix	214	234	0.89
Cytoplasmic	235	386	0.91
Transmembrane Helix	387	408	0.83
Non-Cytoplasmic	409	422	0.71
Transmembrane Helix	423	443	0.75
Cytoplasmic	444	497	0.86