YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sip3-PA, FBpp0303146
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLLLSSVCM ALTSAVIGFA YYQKQQFYPA VVYITKSNAS MGVIYIQFFV IVFMFGKLLS  60
   61 KIFLGTLRAA EFEHLLERFW YALTETCLAF TVFRDDFNPR FVALFTVLLF LKSFHWLAEE 120
  121 RVDFMERSPV LGWLFHIRVG SLLTVLGILD YVLLIHAYNS TLVRGPTVQL VFGFEYAILL 180
  181 TVIASTAIKY VLHAAEMRTD TPWENKAVFL LYTELVIGLI KVVLYILFVV IMAKIYALPM 240
  241 FVFRPMFFTI RNFRKALNDV IMSRRAIRNM NTLYPDATPE ELRQSDNICI ICREDMVNHS 300
  301 KKLPCGHIFH TTCLRSWFQR QQTCPTCRLN ILRTPTVNST AMPRQGDEAV AAAAGNPIPA 360
  361 AAGVQPAGGV PPPAPTAVVD GNQARADVNV AGGQALPPNF ADLFGDASGL PNGLPNLAGL 420
  421 QIPPPPVMPM ISPFMIPPHF GYLTPLPPPP IPQDLTNFTD EELRAMEGLQ RDHIVQRLKL 480
  481 LQNINLMLDS AGIMMSQYQS LSARLQLTAV TPATAVNGSA DSSVYDMPST SATAMAQLET 540
  541 HQVTPTAAAS SASPTMPAEK VTIEDLGADA DEDDIPSTAT EAVSIPNSDA DFEENSSELG 600
  601 ELRKRRLKFL EERNKSAATN ERTTAE

Type	Start	End	Confidence
Cytoplasmic	1	2	0.62
Transmembrane Helix	3	22	0.57
Non-Cytoplasmic	23	40	0.78
Transmembrane Helix	41	60	0.87
Cytoplasmic	61	78	0.68
Transmembrane Helix	79	93	0.59
Non-Cytoplasmic	94	99	0.60
Transmembrane Helix	100	118	0.73
Cytoplasmic	119	133	0.85
Transmembrane Helix	134	155	0.91
Non-Cytoplasmic	156	171	0.76
Transmembrane Helix	172	192	0.91
Cytoplasmic	193	214	0.76
Transmembrane Helix	215	238	0.83
Non-Cytoplasmic	239	626	0.80