YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0292438, CG2...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.91
Transmembrane Helix	29	49	0.95
Cytoplasmic	50	68	0.93
Transmembrane Helix	69	90	0.92
Non-Cytoplasmic	91	98	0.80
Transmembrane Helix	99	122	0.89
Cytoplasmic	123	143	0.95
Transmembrane Helix	144	164	0.94
Non-Cytoplasmic	165	175	0.71
Transmembrane Helix	176	194	0.94
Cytoplasmic	195	203	0.65
Transmembrane Helix	204	223	0.88
Non-Cytoplasmic	224	252	0.86
Transmembrane Helix	253	273	0.92
Cytoplasmic	274	292	0.92
Transmembrane Helix	293	316	0.93
Non-Cytoplasmic	317	346	0.93
Transmembrane Helix	347	374	0.80
Cytoplasmic	375	394	0.84
Transmembrane Helix	395	415	0.95
Non-Cytoplasmic	416	423	0.74
Transmembrane Helix	424	445	0.92
Cytoplasmic	446	452	0.80
Transmembrane Helix	453	471	0.94
Non-Cytoplasmic	472	539	0.97
Transmembrane Helix	540	562	0.88
Cytoplasmic	563	623	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTTTTTTTT MASAVSSASQ DLRFGLTDYF VFVIMLGASA GIGVYFGFFS KSKNTTEEYL  60
   61 RGGKKMQTLP IAISLVASQL SGIAIMSIPA ESYTYGFNYI FVVLAMLVVI PILIYIIVPV 120
  121 FYENNVSNCY EYLEMRFNKR TRQLVTFFFV TNSFLMLPVY MFIPSLAFAQ VTGMNIHLIN 180
  181 VMVSSICIFY TMLGGIKAVV WTDVVQGAIM LLSVVAVGVL GTIRSGGMFT VMERASDGGR 240
  241 FNFDFGLDPR IRMTFWGATM GGIFMWTGHI GLNQSCVQRI VSLPSYSHAK KSLIVSGLGF 300
  301 LIISFFNTIS GIIMFARYYG CDPMLAGLVS KPDKMMPFFV QDIMGHLAGM PGVFISCVFS 360
  361 AALSSLSATL NSLAGVVYFD YIKPRIRHTE ARANWAMKLI VVVMGGYCIL GGFMVQNFNS 420
  421 ILQTVVTITG INTGAVVGVF LLGMFVPRCN AKTAVTSIIV SVVAMVWIIA NGQMNFKSGL 480
  481 IKYEVLPNSL DQCEARGLYM IAEAINKTDF TPVTMKPPSG APVTTAFHSD RDFSLYDISF 540
  541 YWYKVLGSAL VFLCAIPLSY IWRPDENEKQ NPKLYSPFVR KFLSLPVTDQ DLEEVPLRGS 600
  601 KVAATPDLRI EPTEKEKQTV TEP