YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7302090, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	29	0.85
Transmembrane Helix	30	50	0.94
Cytoplasmic	51	68	0.92
Transmembrane Helix	69	89	0.92
Non-Cytoplasmic	90	100	0.76
Transmembrane Helix	101	123	0.91
Cytoplasmic	124	144	0.93
Transmembrane Helix	145	165	0.93
Non-Cytoplasmic	166	176	0.73
Transmembrane Helix	177	195	0.93
Cytoplasmic	196	204	0.63
Transmembrane Helix	205	224	0.86
Non-Cytoplasmic	225	255	0.89
Transmembrane Helix	256	277	0.90
Cytoplasmic	278	296	0.96
Transmembrane Helix	297	322	0.90
Non-Cytoplasmic	323	356	0.89
Transmembrane Helix	357	383	0.81
Cytoplasmic	384	399	0.93
Transmembrane Helix	400	420	0.93
Non-Cytoplasmic	421	428	0.76
Transmembrane Helix	429	451	0.90
Cytoplasmic	452	457	0.82
Transmembrane Helix	458	475	0.96
Non-Cytoplasmic	476	548	0.97
Transmembrane Helix	549	573	0.85
Cytoplasmic	574	626	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSVSNLAS TVATATTATL EDLHFSLTDY IVFSLMLSAS AGIGVYFGFF SKAKNTTEEY  60
   61 LQGGKRMPTL PVAISLVSSQ LSGVAMMSVP AETYSFGFNM IFVVWAMVLS VPVLIYIIVP 120
  121 VFYDNNVSNC YEYLELRFSK RTRQLVTITF ILNQFLMLPV YMFVPSLAFS QVTGYNIHLI 180
  181 NTVVSSICVF YTMLGGIKAV VWTDVVQGSV MLISVVLVAI LGTSNTGGIT NVLENAAEGG 240
  241 RFDFRQVNGF GIDPRLRLTF ISGMASGLLM WTGKLGLDQS CVQRIVSLPS YGHAKRCLLM 300
  301 AGVGFLLIMS FTCFTGIIMF AYYYGCDPIQ AGLVSKPDKL MPFFIQDIMG HMMGMPGVFI 360
  361 SCVFSASLSS LSASLNSFAG VVYFDYIKPR INHSEAKANA TMKLVIVVMG AYCIVGGFIV 420
  421 QNFNSIIQTM WTITGINMGA VVGVFCLGMF VPRCNAKVAV SGIAFSCLVM LWIIINGQMN 480
  481 FKAGLIKYDP LPNGLDQCEA KGFEVILNAI RNKNVTNVGT TAIPSLEAPK ELTTAFDSNR 540
  541 DFSIYDTSFY WYKVLGALLV FAWAIPMSYV WPLDKEEKQN PKLYSPFVRS MLNKPSPVLE 600
  601 LEELPLKTPL SEEQIKEKEN GSATEA