YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	inx3-PA, FBpp030...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVFGMVSAV SGFIKIRYLL DKAVIDNMVF RCHYRITTAI LFTCCIIVTA NNLIGDPISC  60
   61 INDGAIPMHV INTFCWITYT YTIPGQQHRQ IGTDVAGPGL GNEYGQEKRY HSYYQWVPFV 120
  121 LFFQGLMFYV PHWVWKNMED GKIRMITDGL RGMVSVPDDY RRDRQDRILK YFVNSLNTHN 180
  181 GYSFAYFFCE LLNFINVIVN IFMVDKFLGG AFMSYGTDVL KFSNMDQDKR FDPMIEIFPR 240
  241 LTKCTFHKFG PSGSVQKHDT LCVLALNILN EKIYIFLWFW FIILATISGV AVLYSLVVIM 300
  301 MPTTRETIIK RSYRSAQRKE IAGLVRRLEI GDFLILHFLS QNLSTRSYSD MLQQLCGLLG 360
  361 ASRTPSAPST LEMNRISHPI YPPVETFGGG KETET

Type	Start	End	Confidence
Cytoplasmic	1	33	0.86
Transmembrane Helix	34	54	0.76
Non-Cytoplasmic	55	113	0.56
Transmembrane Helix	114	135	0.85
Cytoplasmic	136	181	0.60
Transmembrane Helix	182	204	0.77
Non-Cytoplasmic	205	275	0.55
Transmembrane Helix	276	301	0.87
Cytoplasmic	302	395	0.51