YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gb-PA, FBpp0311411
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	58	0.97
Transmembrane Helix	59	80	0.91
Non-Cytoplasmic	81	93	0.76
Transmembrane Helix	94	113	0.95
Cytoplasmic	114	138	0.77
Transmembrane Helix	139	162	0.76
Non-Cytoplasmic	163	178	0.83
Transmembrane Helix	179	199	0.93
Cytoplasmic	200	209	0.90
Transmembrane Helix	210	231	0.94
Non-Cytoplasmic	232	251	0.90
Transmembrane Helix	252	270	0.93
Cytoplasmic	271	285	0.91
Transmembrane Helix	286	308	0.92
Non-Cytoplasmic	309	327	0.94
Transmembrane Helix	328	353	0.84
Cytoplasmic	354	378	0.84
Transmembrane Helix	379	398	0.92
Non-Cytoplasmic	399	404	0.70
Transmembrane Helix	405	428	0.88
Cytoplasmic	429	438	0.92
Transmembrane Helix	439	461	0.91
Non-Cytoplasmic	462	465	0.82
Transmembrane Helix	466	485	0.92
Cytoplasmic	486	517	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAADELQSP SSEMVLLTPS SGNPPSSIAQ PAANPAEKAQ CREGSAESDS SRVVIKKQLG  60
   61 LLEGVAIILG IIFGSGIFVS PKGVIREVES VGASLVIWVL CGLLSMIGAL CYAELGTAIP 120
  121 KSGGDYAYIF EAYGSLPAFL YLWDAMMIFV PTTNAIMGLT FASYVLEPFF GGACEIPKIA 180
  181 LQLLAAITIC FLTYLNSYYM KVTTKMQNVI MFTKIAALVL IILVGLVWMM MGNVENFTRP 240
  241 FDNTETDPGK MSVAFYSGIF SYAGWNYLNF MTEELRDPYR NLPRAIYISL PLVTGIYVLA 300
  301 NVAYLAVLSP SEMIASNAIA VTFGDKILGV FSLIIPLMVA ISAFGGLSVH IMTSSRICFV 360
  361 GARNGHMPAI LSHISVKSYT PLPSLVFLCF LSIVMLVVSD VYVLITYASI VESFFIMLSV 420
  421 SAVLYFRYTR PCMERPIKVA MWIPALFVIV CAFLVVVPIY VAPYEVGMGV LITIIGIPFY 480
  481 YVGVVWKNKP KWVQSTIDSV TFTCQKLFMS AKEEKED