YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23176068, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSRKLPKGF VLCGLNCLTF VYFPLVLPIL RCSAGAASSA SGGGSKTADD FDFRMQRVRN  60
   61 VLKEVPLIDG HNDLPWNIRK FLKNQLKDFH FGGDLRELAP WSSSAWSHTD LRRLKEGMVS 120
  121 AQFWSAYAPC SSQHLDAVQL TLEQIDLIRR LVQLYPHHMA LVTTASGIEQ THRTGKIASL 180
  181 IGVEGGHAIG TSLSVLRMFY QLGARYLTLT HTCNTPWADC CKVDEPGKYP HIGGLSQFGK 240
  241 LVVKEMNRLG MIVDLSHVSV PTMLDALAAS RAPLIFSHSS AHAICNSSRN VPDHVLQRIA 300
  301 INGGLVMVAF YPHFVSCSGQ ATLHDVVAHI NHIREVAGID HVGIGAGYDG VNLVPKGLED 360
  361 VSKYPHLFAA LLESDKWSEE DIAKLAGRNL IRVFKEVEAD AQIL

Type	Start	End	Confidence
Signal Peptide	1	36	0.90
N-region	1	27
H-region	28	33
C-region	34	36
Cleavage Site	36	37
Non-Cytoplasmic	37	404	0.99