YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OstStt3-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.89
Transmembrane Helix	12	32	0.90
Non-Cytoplasmic	33	80	0.86
Transmembrane Helix	81	104	0.85
Cytoplasmic	105	115	0.69
Transmembrane Helix	116	135	0.92
Non-Cytoplasmic	136	141	0.70
Transmembrane Helix	142	160	0.94
Cytoplasmic	161	170	0.71
Transmembrane Helix	171	201	0.59
Non-Cytoplasmic	202	208	0.63
Transmembrane Helix	209	230	0.88
Cytoplasmic	231	237	0.84
Transmembrane Helix	238	260	0.87
Non-Cytoplasmic	261	267	0.83
Transmembrane Helix	268	287	0.94
Cytoplasmic	288	298	0.90
Transmembrane Helix	299	325	0.89
Non-Cytoplasmic	326	359	0.94
Transmembrane Helix	360	380	0.93
Cytoplasmic	381	387	0.91
Transmembrane Helix	388	405	0.92
Non-Cytoplasmic	406	410	0.58
Transmembrane Helix	411	431	0.89
Cytoplasmic	432	488	0.92
Transmembrane Helix	489	508	0.94
Non-Cytoplasmic	509	774	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRTPKMLNS KVAGYSSLIT FAILLIAWLA GFSSRLFAVI RFESIIHEFD PWFNYRATAY  60
   61 MVQNGWYNFL NWFDERAWYP LGRIVGGTVY PGLMITSGGI HWLLHVLNIP VHIRDICVFL 120
  121 APIFSGLTSI STYLLTKELW SAGAGLFAAS FIAIVPGYIS RSVAGSYDNE GIAIFALQFT 180
  181 YFLWVRSVKT GSVFWSAAAA LSYFYMVSAW GGYVFIINLI PLHVFVLLIM GRYSPRLLTS 240
  241 YSTFYILGLL FSMQIPFVGF QPIRTSEHMA ALGVFVLLMA VATLRHLQSV LSRNEFRKLF 300
  301 IVGGLLVGVG VFVAVVVLTM LGVVAPWSGR FYSLWDTGYA KIHIPIIASV SEHQPTTWFS 360
  361 FFFDLHILVC AFPVGVWYCI KQINDERVFV VLYAISAVYF AGVMVRLMLT LTPVVCMLAG 420
  421 VAFSGLLDVF LQEDSSKRMG TAISAATEVD EAEDSIEKKT LYDKAGKLKH RTKHDAQQDT 480
  481 GVSSNLKSIV ILAVLMLLMM FAVHCTWVTS NAYSSPSIVL AFHNSQDGSR NILDDFREAY 540
  541 YWLSQNTADD ARVMSWWDYG YQIAGMANRT TLVDNNTWNN SHIALVGKAM SSTEEKSYEI 600
  601 MTSLDVDYVL VIFGGVIGYS GDDINKFLWM VRIAEGEHPK DIKESDYFTD RGEFRVDAEG 660
  661 APALLNCLMY KLSYYRFGEL KLDYRGPSGY DRTRNAVIGN KDFDLTYLEE AYTTEHWLVR 720
  721 IYRVKKPHEF NRPSLKTKER TIPPANFISR KNSKRRKGYI RNRPVVVKGK RTLK