YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Syx18-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDITQSFKAS VMTVRLQRKA ELAGKAKPAT VPTKTGPIGP KDDFAKQAKE VCNKITSLRN  60
   61 VLIENRTAYM RIGQHLKSAA HMTDAQRDLI DRESEKFVTF YTQHLAKMRS DWKSAKRKPQ 120
  121 ERQHIDAVLD LLVSYLHSVE QIYLDQKKYR VQHELETYRL LKLAADKKKI PVRPAGSNSG 180
  181 KLGRRQVSND DSEATKSSSQ ANGNHDESAD NDWNNDAWGD WDEDEEGDEV DDHDGEKGKE 240
  241 ANQANQHKPR TRKRSKANRS DLNNSSSKMA LDEELQQQQE ADDDDPLSAE DVQLFEAENV 300
  301 HIYNFLQGVS EEVEQIEKNV VDIAQLQDIF TEKVAMQQHN IDRIVSAVVG TTENVKDANE 360
  361 QIRQATQRNA GLRVWSLFFL LVMSFSLLFL DWYYD

Type	Start	End	Confidence
Cytoplasmic	1	370	0.70
Transmembrane Helix	371	393	0.88
Non-Cytoplasmic	394	395	0.63