YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG6178-PA
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSKLLPGNI VYGGPVTERQ AQDSRSLGQY ILDKYKSFGD RTVLVDAVNG VEYSASFMHK  60
   61 SIVRLAYILQ KLGVKQNDVV GLSSENSVNF ALAMFAGLAV GATVAPLNVT YSDREVDHAI 120
  121 NLSKPKIIFA SKITIDRVAK VASKNKFVKG IIALSGTSKK FKNIYDLKEL MEDEKFKTQP 180
  181 DFTSPAANKD EDVSLIVCSS GTTGLPKGVQ LTQMNLLATL DSQIQPTVIP MEEVTLLTVI 240
  241 PWFHAFGCLT LITTACVGAR LVYLPKFEEK LFLSAIEKYR VMMAFMVPPL MVFLAKHPIV 300
  301 DKYDLSSLMV LLCGAAPLSR ETEDQIKERI GVPFIRQGYG LSESTLSVLV QNDEFCKPGS 360
  361 VGVLKVGIYA KVIDPDTGKL LGANERGELC FKGDGIMKGY IGDTKSTQTA IKDGWLHTGD 420
  421 IGYYDDDFEF FIVDRIKELI KYKGYQVPPA EIEALLLTND KIKDAAVIGK PDEEAGELPL 480
  481 AFVVKQANVQ LTENEVIQFV NDNASPAKRL RGGVIFVDEI PKNPSGKILR RILREMLKKQ 540
  541 KSKL

Type	Start	End	Confidence
Non-Cytoplasmic	1	241	0.79
Transmembrane Helix	242	264	0.83
Cytoplasmic	265	278	0.79
Transmembrane Helix	279	300	0.67
Non-Cytoplasmic	301	544	0.85