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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Hmgcr-PA
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGRLFRAHG EFCASHPWEV IVALLTITAC MLTVDKNNTL DASSGLGTAT ASAAAAGGSG  60
   61 SGAGSGASGT IPPSSMGGSA TSSRHRPCHG WSQSCDGLEA EYNAADVILM TIVRCTAVLY 120
  121 CYYQFCSLHR LGSKYVLGIA GLFTVFSSFI FTTAIIKFLG SDISELKDAL FFLLLVIDLS 180
  181 NSGRLAQLAL SGSNQAEVTQ NIARGLELLG PAISLDTIVE VLLVGVGTLS GVQRLEVLCM 240
  241 FAVLSVLVNY VVFMTFYPAC LSLIFDLSRS GVDMSVVREK AKGSLLLKSL TEEEQKANPV 300
  301 LQRVKLIMTT GLMAVHIYSR VAFSGSDYDA VDKTLTPTLS LNVSNNRTES GEIADIIIKW 360
  361 LTMSADHIVI SIVLIALVVK FICFDNRDPL PDQLRQSGPV AIAAKASQTT PIDEEHVEQE 420
  421 KDTENSAAVR TLLFTIEDQS SANASTQTDL LPLRHRLVGP IKPPRPVQEC LDILNSTEEG 480
  481 SGPAALSDEE IVSIVHAGGT HCPLHKIESV LDDPERGVRI RRQIIGSRAK MPVGRLDVLP 540
  541 YEHFDYRKVL NACCENVLGY VPIPVGYAGP LLLDGETYYV PMATTEGALV ASTNRGCKAL 600
  601 SVRGVRSVVE DVGMTRAPCV RFPSVARAAE AKSWIENDEN YRVVKTEFDS TSRFGRLKDC 660
  661 HIAMDGPQLY IRFVAITGDA MGMNMVSKGA EMALRRIQLQ FPDMQIISLS GNFCCDKKPA 720
  721 AINWIKGRGK RVVTECTISA ATLRSVLKTD AKTLVECNKL KNMGGSAMAG SIGGNNAHAA 780
  781 NMVTAVFLAT GQDPAQNVTS SNCSTAMECW AENSEDLYMT CTMPSLEVGT VGGGTGLPGQ 840
  841 SACLEMLGVR GAHATRPGDN AKKLAQIVCA TVMAGELSLM AALVNSDLVK SHMRHNRSSI 900
  901 AVNSANNPLN VTVSSCSTIS 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle