YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	klg-PA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.58
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIISRSIRT GALAPPITAH ASANANASGL RKSSQRRNRA PLQMNCPILI VISLGWLLHA  60
   61 HAGSGGFAVE AAISNRGSNS RSMSNVQQSA VAASTLTATL PRFLSRGHTY RAVVGDTLVL 120
  121 PCQVENLGNF VLLWRRGTNV LTASNIMVTR DERVRLIDGY NLEISDLEPQ DAGDYVCQIS 180
  181 DKINRDQVHT VEILVPPSVR AIPTSGQLQA RKGGPITLEC KGSGNPVPSI YWTKKSGANK 240
  241 STARIGDGPI LTLEKLERQQ AGVYQCTADN GVGDPVTVDM RLDVLYPPDI QVEKSWIHSG 300
  301 EGFEAKLVCI VFADPVATVS WYQNSFPIQS TDRRIMATRA NRHMLTIRHI QQEDFGNYSC 360
  361 VADNSLGRSR KYMELSGRPG AAEFYSPKWG RSPDSYNLTW KIDSYPPLEE VRLLYRRVQM 420
  421 NETYQQPGRW HDFILTPEHR PASEPLTHIM SYTIKNLHPG GYYEAIVQAK NRYGWNEVSD 480
  481 IFQFVVATNS QDIGPEDAEV VASSKSRSNS ASIGSLPGST VLHTALLLAL ALSNCQFDRR 540
  541 RLGLG

Type	Start	End	Confidence
Signal Peptide	1	25	0.72
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	512	0.96
Transmembrane Helix	513	535	0.69
Cytoplasmic	536	545	0.73