YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG5315-PA, CG531...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSATNLLEQ QGSAADVSGG SHPAEVEVTT QARATFGMDA EGHATGEAVT TTTATLRREG  60
   61 SDEDIFEQVQ MILRKRRGWG PEDSLSPNDL DILEYDDELV EEDDAGCPLP STPEDTQLIE 120
  121 AEMTEVLKAG VLSDEIDLGA LAHNAAEQAE EFVRKVWEAS WKVCHYKNLP KWLQDNDFLH 180
  181 RGHRPPLPSF RACFKSIFRV HTETGNIWTH LLGCIAFIGV ALYFISRPSV EIQTQEKIVF 240
  241 GAFFIGAIVC LGFSFAFHTL SCHSVEMGRL FSKLDYCGIA LLIMGSFVPW LYYGFYCHYQ 300
  301 PKVIYLSVVS ILGILSIVVS LWDKFSEPAL RPLRAGVFMS FGLSGVIPAI HYSIMEGWFS 360
  361 QMSRASLGWL ILMGLLYILG ALLYALRVPE RWFPGKFDIW GQSHQIFHIL VIAAAFVHYH 420
  421 GISEMAMYRV MYSECTVPIE PITF

Type	Start	End	Confidence
Cytoplasmic	1	205	0.90
Transmembrane Helix	206	226	0.93
Non-Cytoplasmic	227	237	0.84
Transmembrane Helix	238	260	0.91
Cytoplasmic	261	273	0.77
Transmembrane Helix	274	294	0.92
Non-Cytoplasmic	295	302	0.75
Transmembrane Helix	303	322	0.97
Cytoplasmic	323	332	0.77
Transmembrane Helix	333	355	0.88
Non-Cytoplasmic	356	364	0.85
Transmembrane Helix	365	386	0.93
Cytoplasmic	387	403	0.80
Transmembrane Helix	404	422	0.91
Non-Cytoplasmic	423	444	0.85