YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	oa2-PA, FBpp0304263
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLLQRLQAM SATTTRTILE GSISSFGGGT NEPLASKIPV LEESASHARY LKFIADGLID  60
   61 EGLGSAVGSG SSIAVSVEDV VAGQAQDIQA SEGSTDDADG SSHLALVFVK CFIIGFIILA 120
  121 AILGNMLVIV SVMRHRKLRI ITNYFVVSLA VADMLVALCA MTFNASVMIS GKWMFGSVMC 180
  181 DMWNSFDVYF STASIMHLCC ISVDRYYAIV QPLDYPLIMT QRRVFIMLLM VWLSPALLSF 240
  241 LPICSGWYTT TENYKYLKSN PHICEFKVNK AYAIVSSSMS FWIPGIVMLS MYYRIYQEAD 300
  301 RQERLVYRSK VAALLLEKHL QISQIPKPRP SIQVEQSTIS TMRRERKAAR TLGIIMSAFL 360
  361 ICWLPFFLWY IVSSLCDSCI TPRLLVGILF WIGYFNSALN PIIYAYFNRD FRAAFKKTLK 420
  421 SLFPYAFYFC RRGRGRDDDR DLEFGGPSRR GTNGAQRTGS GSAEMANCVN STASSEIHMS 480
  481 VMRARQYAVN VTPTTDAQMQ QLHPLYTN

Type	Start	End	Confidence
Non-Cytoplasmic	1	110	0.68
Transmembrane Helix	111	130	0.93
Cytoplasmic	131	143	0.77
Transmembrane Helix	144	167	0.90
Non-Cytoplasmic	168	187	0.86
Transmembrane Helix	188	208	0.90
Cytoplasmic	209	223	0.94
Transmembrane Helix	224	247	0.86
Non-Cytoplasmic	248	270	0.94
Transmembrane Helix	271	295	0.83
Cytoplasmic	296	350	0.97
Transmembrane Helix	351	372	0.93
Non-Cytoplasmic	373	384	0.86
Transmembrane Helix	385	407	0.87
Cytoplasmic	408	508	0.98