YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	how-PA, how-PD
Protein type:	Globular with Signal Peptide
Type Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVCESKAVV QQQLQQHLQQ QAAAAVVAVA QQQQAQAQAQ AQAQAQQQQQ APQVVVPMTP  60
   61 QHLTPQQQQQ STQSIADYLA QLLKDRKQLA AFPNVFTHVE RLLDEEIARV RASLFQINGV 120
  121 KKEPLTLPEP EGSVVTMNEK VYVPVREHPD FNFVGRILGP RGMTAKQLEQ ETGCKIMVRG 180
  181 KGSMRDKKKE DANRGKPNWE HLSDDLHVLI TVEDTENRAT VKLAQAVAEV QKLLVPQAEG 240
  241 EDELKKRQLM ELAIINGTYR DTTAKSVAVC DEEWRRLVAA SDSRLLTSTG LPGLAAQIRA 300
  301 PAAAPLGAPL ILNPRMTVPT TAASILSAQA APTAAFDQTG HGMIFAPYDY ANYAALAGNP 360
  361 LLTEYADHSV GAIKQQRRLA TNREHPYQRA TVGVPAKPAG FIEIQ

Type	Start	End	Confidence
Signal Peptide	1	37	0.51
N-region	1	28
H-region	29	34
C-region	35	37
Cleavage Site	37	38
Non-Cytoplasmic	38	405	0.99