YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	rtet-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	49	0.93
Transmembrane Helix	50	71	0.92
Non-Cytoplasmic	72	106	0.89
Transmembrane Helix	107	128	0.89
Cytoplasmic	129	141	0.65
Transmembrane Helix	142	159	0.92
Non-Cytoplasmic	160	166	0.56
Transmembrane Helix	167	189	0.78
Cytoplasmic	190	201	0.77
Transmembrane Helix	202	225	0.92
Non-Cytoplasmic	226	232	0.89
Transmembrane Helix	233	256	0.90
Cytoplasmic	257	304	0.86
Transmembrane Helix	305	328	0.80
Non-Cytoplasmic	329	338	0.77
Transmembrane Helix	339	357	0.88
Cytoplasmic	358	366	0.82
Transmembrane Helix	367	386	0.94
Non-Cytoplasmic	387	392	0.75
Transmembrane Helix	393	414	0.91
Cytoplasmic	415	426	0.83
Transmembrane Helix	427	451	0.77
Non-Cytoplasmic	452	455	0.53
Transmembrane Helix	456	472	0.78
Cytoplasmic	473	477	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADLRSRHNG TAAMEKQSHS QTGSHHHNNN KALDKEASEN GKPEKSDPMI YIIFVSLLFD  60
   61 LLAFTIILPL LPSLLEHYRQ NDSSGLYAVL TDRVRWFQQL LGAPDRYISV LFGGFLGSMF 120
  121 SFLQFVASPI VGGLSDYYGR KPVLLACASG IALSYLIWAC SSNFALFVLA RFVGGISKGN 180
  181 ISLCMSVITD VSSVKTRGRG MALVGVAFSL GFIVGPMIGA LFAIFSDKSG STWFVLPSLL 240
  241 AFGLAVGDLV VLACCLRETL PKEKRVKEIS SALSYGLQLL NFSAIFRFAA IKNVPKKDIA 300
  301 ALRSIGLVYF LYLFLYSGLE FTVTFLMYHK FGYTSMDQAK MFLTTGVIMT LLQGSVVRRL 360
  361 PEAKIKGYAI FSLYLIVPAF VVVGLAEGSR MLYAGMTLFA ISTAFAVTCL TTLVSKYGND 420
  421 DQKGSVLGIF RSLGALARAL GPVVGCIAFW CVGSRITYIA GGLLLIYPAM ALQRARI