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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: H-PA, H-PD
Protein type: Transmembrane
Type Confidence: 0.83
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALLNDVTSV AECNRQTTMT DEHKSNINSN SSHSSNNNNN GSSSNNDNNS NDDAASSSNS  60
   61 KNNNTSNESS HSNNNTSSII AEAAAKFLLK NGLNGSSSTS YPPLPPPLPA NLSRTTTPTT 120
  121 TTTPSSSSST ASNGFLPHAK TPKSSSIMAA SAAVAASVVG ATASKPTIDV LGGVLDYSSL 180
  181 GGAATGSLPT TAVVAAAAGT AKIGKGSNSG GSFDMGRTPI STHGNNSWGG YGGRLQFFKD 240
  241 GKFILELARS KDGDKSGWVS VTRKTFRPPS AATSATVTPT SAVTTAYPKN ENSTSLSFSD 300
  301 DNSSIQSSPW QRDQPWKQSR PRRGISKELS LFFHRPRNST LGRAALRTAA RKRRRPHEPL 360
  361 TTSEDQQPIF ATAIKAENGD DTLKAEAAEA VEIENVAVAD TTTNEIKIEK PDTIKGEDDA 420
  421 ERLEKEPKKA VSDDSESKEA SPGQQVEPQP KDETVDVEMK MNTSEDEEPM TELPRITNAV 480
  481 NGDLNGDLKA SIGKPKSKPK PKAKLSSIIQ KLIDSVPARL EQMSKTSAVI ASTTTSSDRI 540
  541 GGGLSHALTH KVSPPSSATA AGRLVEYHTQ HVSPRKRILR EFEKVSLEDN GCVNNGSGGA 600
  601 SSGGAGGKRS RAKGTSTSSP AGKASPMNLA PPQGKPSPSP GSSSSSTSPA TLSTQPTRLN 660
  661 SSYSIHSLLG GSSGSGSSSF SSSGKKCGDH PAAIISNVHH PQHSMYQPSS SSYPRALLTS 720
  721 PKSPDVSGSN GGGGKSPSHT GTKKRSPPYS AGSPVDYGHS FYRDPYAGAG RPSTSGSASQ 780
  781 DLSPPRSSPA SPATTPRTVP KKTASIRREF ASPSASSSSC PSPGDRSASP PERRHMQQQP 840
  841 HLQRSSPLHY YMYPPPPQVN GNGSAGSPTS APPTSNSSAA AVAAAAAAAA AYIPSPSIYN 900
  901 PYISTLAALR HNPLWMHHYQ TGASPLLSPH PQPGGSAAAA AAAAAARLSP QSAYHAFAYN 960
  961 GVGAAVAAAA AAAAFGQPAP SPHTHPHLAH PHQHPHPAAL TTHHSPAHLA TPKLTDSSTD1020
 1021 QMSATSSHRT ASTSPSSSSA SASSSAATSG ASSSAMFHTS SLRNEQSSDL PLNLSKH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle