YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG4459-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	35	0.87
Transmembrane Helix	36	56	0.83
Non-Cytoplasmic	57	164	0.95
Transmembrane Helix	165	187	0.85
Cytoplasmic	188	194	0.87
Transmembrane Helix	195	213	0.94
Non-Cytoplasmic	214	218	0.84
Transmembrane Helix	219	241	0.90
Cytoplasmic	242	250	0.88
Transmembrane Helix	251	273	0.92
Non-Cytoplasmic	274	279	0.79
Transmembrane Helix	280	299	0.94
Cytoplasmic	300	367	0.99
Transmembrane Helix	368	389	0.91
Non-Cytoplasmic	390	400	0.72
Transmembrane Helix	401	421	0.93
Cytoplasmic	422	427	0.88
Transmembrane Helix	428	446	0.95
Non-Cytoplasmic	447	459	0.90
Transmembrane Helix	460	481	0.90
Cytoplasmic	482	490	0.87
Transmembrane Helix	491	511	0.93
Non-Cytoplasmic	512	516	0.70
Transmembrane Helix	517	537	0.90
Cytoplasmic	538	632	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDSQSMGSI PRKSSPELDV VEQVNGSFGR WQLRTILLIF LCKIPSAWFT AIIIYTAPYP  60
   61 WKGELVCHPA DWNVSRSQTE HVDRNHPLWQ DARSTDRLFN VDVCNAYSNS LARGFVRSHG 120
  121 QEWNASQSKE PGGQSSLPCE HVEHRTDYKS LISQFDLICS RRVLVALTQS FHALGALIGG 180
  181 LMAYSALKKI SPRRLMLLGM IGQIFCGNLT GLVDTYQLHI YFRCLTSIFC ALMYTSGQFI 240
  241 LNDITSGKAR IIVVTLSELF WSMGLVLLPA ISIYFDNWSY LYVAISSSLI VLVWLHRWIA 300
  301 DAPRWLLQHQ RVEAALRQLL ESATYNNRKV PLTLDVQLTM YANDLDQKSK QKHSYCQVWD 360
  361 GETKRSQLVY IHLIWGGAMV LYNIILLMIR NLGAQQVHVN TAAMGFAEMV GLFVGLYLIL 420
  421 YTRRHWRWAG NLMIIAGLST YLIWLLPETE RNSRRVGLEL VFWLILKIAN SASIAVLTTC 480
  481 TSEIVSKEKR VVLMLSVISF SRVCLLFCPF LSCLTVIHHL VPITILATMG WIYGLALRRL 540
  541 NRYYWNTEQP QISQVPTPNT YRRQSAIILR RCSTVSSDCS AYSNELLSNF ERNMAVSIAD 600
  601 IWHINFHPSS EIEMEVEQSG PEAHRAHSSE TI