YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Nup58-PA
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTPTTNNAI GGATAATGAF AFGARPATTT APPPSFGAAT STPTFGAAPA TTSLFAAPAA  60
   61 TPAFGAPAAT PAFGAPASTP GFGATSTAAP AFGTAAATPA FGIPAATSAF GAPAATPAFG 120
  121 AAAATPAFGA PAATPAFGAP AATSAFGAPA ATTAFGAPAS TQASAFGAPA PAVGTVAPTF 180
  181 SFATPATSAP TTAPPAFGFG TTATTAAAAM PASLSSGIGS FSFPKPQATT AASLNFNTTT 240
  241 TTATAQPFNT GLKLGTTNAT TTLGGGGIFS KPAGQAAAPA ASTFVGLGGI DVTATQPKLG 300
  301 DNKQDGIKIK ETQVPDEIIK TVDGLKAYIK QQKTISSDIG RTSTSKFTNV SHEITNLKWA 360
  361 LQNMATLVEG SNQQIRLMRQ ETVKAIQSLE MAQRTQDTPA GLQFENNAPF QYFQCLVAKY 420
  421 EQDLIAFRQQ IALTERHMHA ISNPQSISPD DLKRGFRQLN ESFISLAGRL HEVHQRVEEH 480
  481 KEHYLNLRRY RLRDTTNVFE RIDNPPLPTV EPQRISSGPT PFSNISALMN KSYAAAASSA 540
  541 SNATGN

Type	Start	End	Confidence
Cytoplasmic	1	8	0.57
Transmembrane Helix	9	28	0.71
Non-Cytoplasmic	29	44	0.43
Transmembrane Helix	45	70	0.67
Cytoplasmic	71	71	0.28
Transmembrane Helix	72	103	0.61
Non-Cytoplasmic	104	104	0.26
Transmembrane Helix	105	130	0.67
Cytoplasmic	131	131	0.31
Transmembrane Helix	132	157	0.66
Non-Cytoplasmic	158	164	0.48
Transmembrane Helix	165	186	0.77
Cytoplasmic	187	195	0.50
Transmembrane Helix	196	219	0.77
Non-Cytoplasmic	220	546	0.69