YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0308311, CG7...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.82
Transmembrane Helix	12	32	0.89
Cytoplasmic	33	42	0.91
Transmembrane Helix	43	64	0.93
Non-Cytoplasmic	65	90	0.87
Transmembrane Helix	91	114	0.85
Cytoplasmic	115	133	0.77
Transmembrane Helix	134	151	0.81
Non-Cytoplasmic	152	158	0.62
Transmembrane Helix	159	181	0.88
Cytoplasmic	182	188	0.75
Transmembrane Helix	189	209	0.83
Non-Cytoplasmic	210	240	0.76
Transmembrane Helix	241	258	0.76
Cytoplasmic	259	277	0.86
Transmembrane Helix	278	301	0.86
Non-Cytoplasmic	302	331	0.93
Transmembrane Helix	332	354	0.83
Cytoplasmic	355	384	0.86
Transmembrane Helix	385	408	0.89
Non-Cytoplasmic	409	414	0.75
Transmembrane Helix	415	435	0.92
Cytoplasmic	436	444	0.69
Transmembrane Helix	445	464	0.92
Non-Cytoplasmic	465	534	0.95
Transmembrane Helix	535	557	0.83
Cytoplasmic	558	681	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKDLSTMGW DYLMFVLFIA LTVLGPLWKR IFGKKKERSK ADYVFATGGV SIVAVMISIA  60
   61 RGTLGVRSVL GYPSELYYRG SAMWEIIYGM MSAYPIVCFM FVPVYFNLGI TSVYQYIDLR 120
  121 FKSRTVRCLA SATYIVRQIC NLGITVYTPS VALSTVIGIP YWASITGMAV ICIFFTIMGG 180
  181 LKAAINADVI QTVTILVVTV AVCIQGTIST GGVKKVYQLN RDNGRLNFWN FTGDMTVRVD 240
  241 TTSAWLGQLF MSLSQIGCQQ NFMQRYVSLK SLKQVRRVML TNVPLVFFFF SISWISGMVI 300
  301 YSTYINCDPY AEGYIKKPDE ILPFFVEDQL GFLPGFVGIF MATLFNGALC MMVSNLNSLA 360
  361 TVIWEDFISQ LPKFKGLSDK QQLRILKSIT VVCGLIIMGV AFGVGLLAGV IESSLLVFSA 420
  421 TSGPLLGCFI LAMMVPIANW KGTSAGMVTA CAFVLWIIGG GMTVTKDNPL LPTSTDGCTN 480
  481 DTFAQSIGKP IVEQGQMPWL LSHTPIDGFN QSFVPTQPTI APERSGLETF YSISFMYYSL 540
  541 IGTALTVIIG TVISLLTQHP DDAYDGKLLH PLIFRLCERF SGRKPYYVKH EEESGLNGRS 600
  601 SSDSSATTTT CKAEKVNHGY ESSPEDKEKS SPIAVVFTTS EGTGSAGDQQ SICDSSRIQL 660
  661 DIVPGEGETG VYRQLAGRSA L