YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VAChT-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.97
Transmembrane Helix	33	56	0.87
Non-Cytoplasmic	57	99	0.90
Transmembrane Helix	100	119	0.50
Cytoplasmic	120	127	0.47
Transmembrane Helix	128	152	0.84
Non-Cytoplasmic	153	156	0.40
Transmembrane Helix	157	174	0.56
Cytoplasmic	175	185	0.85
Transmembrane Helix	186	208	0.91
Non-Cytoplasmic	209	215	0.83
Transmembrane Helix	216	236	0.93
Cytoplasmic	237	259	0.91
Transmembrane Helix	260	282	0.88
Non-Cytoplasmic	283	300	0.91
Transmembrane Helix	301	320	0.94
Cytoplasmic	321	330	0.79
Transmembrane Helix	331	350	0.96
Non-Cytoplasmic	351	356	0.77
Transmembrane Helix	357	379	0.90
Cytoplasmic	380	386	0.77
Transmembrane Helix	387	409	0.83
Non-Cytoplasmic	410	418	0.58
Transmembrane Helix	419	440	0.86
Cytoplasmic	441	578	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASFQIPVIN LEVREVKDIV WEKIQEPVNQ RRLILVIVSI ALLLDNMLYM VIVPIIPDYL  60
   61 REIGSFDDGP TPPPLRDNIT GKIIPVHHDH HGQDSATGIL FASKAIVQLM VNPFSGGLID 120
  121 KIGYDLPMMI GLTIMFFSTA VFACGSSYSV LFFARSLQGA GSAFADTAGL AMIADRFTEE 180
  181 NERSQALGIA LAFISFGCLV APPFGGALYQ FAGKEVPFLI LALVCLLDGL MLLLVMKPVK 240
  241 EAMKQSKDVQ DQVIPIWRLL MDPYIAVCAG ALTMSNVALA FLEPTISLWM EDNMTTDNWK 300
  301 IGMVWLPAFF PHVLGVVITV KMARKYPQHQ WLMAAGGLAL EGFSCFIIPF CSGYKMLMLP 360
  361 ICVICFGIAL IDTALLPTLG YLVDVRYVSV YGSIYAIADI SYSIAYAVGP IIAGGVVEAI 420
  421 GFTALNFLIA FSNLAYVPVL RKLRNIYDFK PFENEANILM QDPPNKEYQT YVMHDQKPVE 480
  481 GGVKNHLEYG QQYQQEQETN LDDQQYEYQQ QQQGYQQGYQ QDQGYQPGYQ EQGGSYAPQG 540
  541 QPRVANPFQQ QQQQQQQQQQ QVQSRGPAAP ANPFRQGF