YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0311989, CG7...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVNLQLNNL SAIYPSLMYV AASSSSLRGL GLGSGVGVGG LPENISIVYE DAGNGTGGGG  60
   61 VGGVGGGYPS GPNGTDAVAL TEPGPTAPVT TFNYYNESAA AAEWAHFYDL VLSWQGIILI 120
  121 AVFATFIVVT VIGNTLVILA ILTTRRLRTI TNCFVMSLAV ADLLVGIFVM PPAVAVHLIG 180
  181 SWQLGWVLCD IWISLDVLLC TASILSLCAI SVDRYLAVTR PLTYSRKRRS KRLALIMILI 240
  241 VWLLALAITC PPMLGWYEPG RRDLRECRYN QNEGYVIFSA MGSFFIPMAV MIYVYARISC 300
  301 VIASRHDNMT DISVHNKKFK RYTAADVENE LSEQEQHSSV GQRQRQATSR TFSNQTIAKE 360
  361 LQDMMLSDSD NCAAMGAGGA GGGGGGASSA TGGTHCQSLL ALPSGGVGGS MGCAKNGCYE 420
  421 LTRPSSLKRA STASTTITTM TSGMGPGSSL LDAQWQSQPP GQTGQVQTHS LSQPPRTHSF 480
  481 RHSHGERDRE RLRSHHHHPH YHHQAGVTTT STSGNTSANT NSKSLSNRIT SLKKENKTTQ 540
  541 TLSIVVGGFI ACWLPFFINY LITPFLAEHQ ASQMLAKALT WLGWFNSAIN PFIYAFYSVD 600
  601 FRAAFWRLTC KRFFSAGQKP QFPTNTMSIR R

Type	Start	End	Confidence
Cytoplasmic	1	11	0.77
Transmembrane Helix	12	32	0.71
Non-Cytoplasmic	33	116	0.88
Transmembrane Helix	117	141	0.91
Cytoplasmic	142	152	0.81
Transmembrane Helix	153	175	0.87
Non-Cytoplasmic	176	191	0.80
Transmembrane Helix	192	212	0.94
Cytoplasmic	213	232	0.89
Transmembrane Helix	233	255	0.92
Non-Cytoplasmic	256	274	0.95
Transmembrane Helix	275	296	0.92
Cytoplasmic	297	540	0.92
Transmembrane Helix	541	562	0.90
Non-Cytoplasmic	563	579	0.85
Transmembrane Helix	580	599	0.85
Cytoplasmic	600	631	0.88