YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0304482, FBp...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALEHPDAM LPYSKLLSTA LTVASGNSNS SDGTLLLIQT SAAPGGDVMA TGAGAGKLGV  60
   61 PSMNSYLVSM AWPKSLAVAV FLVIILVTVV GNTLVILAVL TTRRLRTVTN CFVMNLAITD 120
  121 WLVGTCVMPP SVVLYITGTW RFGWILCDIW ISLDILLCSG SILSLCAISL DRYLAVTQPL 180
  181 TYSKKRRSKR LALLMILVVW ITALSITCPP YLGWYEVGRH QAEFVDCRYN QNKGYVVFSA 240
  241 MGSFFIPLTV MLYVYVKIGY VLTSRRQRIV RDAYSERTAD YDVDGDNFIS ESEHYHCTPT 300
  301 KWLPNRKSRW RFNSLHDPPP SAATNAAAKG HQSSVKCSKC SKCSSATGTA GAGAGAGVVD 360
  361 KTLTFKHQPT FYELVEVSRL SSLIHCSAIS CKYGGPCMHS TPSGMHYVGT EASFSDTCLG 420
  421 GNVSNNTTTT TTNTVALETN EKLEAEAKQK QQQQRSSFDH HHPHAHHHGS HGQQSHHNHH 480
  481 HRMPMRVSTT KRDSKTAKTL TIVMGGLIAC WLPFFVYYLL IPFLPRPAVL EDLMFGFTWI 540
  541 GWVNCAINPF IYAFYNPDFR TAFWRLTCRP ICKQKRPPNH LAMFRG

Type	Start	End	Confidence
Cytoplasmic	1	34	0.65
Transmembrane Helix	35	55	0.53
Non-Cytoplasmic	56	75	0.84
Transmembrane Helix	76	100	0.91
Cytoplasmic	101	116	0.76
Transmembrane Helix	117	137	0.85
Non-Cytoplasmic	138	149	0.77
Transmembrane Helix	150	170	0.93
Cytoplasmic	171	190	0.90
Transmembrane Helix	191	213	0.93
Non-Cytoplasmic	214	237	0.91
Transmembrane Helix	238	261	0.84
Cytoplasmic	262	499	0.99
Transmembrane Helix	500	521	0.93
Non-Cytoplasmic	522	534	0.90
Transmembrane Helix	535	555	0.92
Cytoplasmic	556	586	0.96