YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0293851, sll-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.94
Transmembrane Helix	10	30	0.90
Non-Cytoplasmic	31	59	0.93
Transmembrane Helix	60	82	0.87
Cytoplasmic	83	142	0.95
Transmembrane Helix	143	162	0.90
Non-Cytoplasmic	163	185	0.87
Transmembrane Helix	186	205	0.87
Cytoplasmic	206	269	0.79
Transmembrane Helix	270	289	0.90
Non-Cytoplasmic	290	297	0.66
Transmembrane Helix	298	319	0.87
Cytoplasmic	320	332	0.70
Transmembrane Helix	333	354	0.84
Non-Cytoplasmic	355	370	0.72
Transmembrane Helix	371	390	0.93
Cytoplasmic	391	398	0.62
Transmembrane Helix	399	419	0.79
Non-Cytoplasmic	420	425	0.67
Transmembrane Helix	426	445	0.97
Cytoplasmic	446	465	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYAYNKMGRV PELVICSFIV VTLLVIHFFS DLLRASLGGY YNQDVTLSQL VESQNSDYAW  60
   61 FLKLLVNCFG YSCVFVPGFL IYKYVGRINY LERGNKTFLH KAINMCITGN SGYDQLDAGT 120
  121 STADKDRPAA STAPKRTSSQ EAVQLLWCFG GLMISYLTWG VLQEKIMTQN YLNFTGESAK 180
  181 FKDSQFLVFS NRLLAFLVAL AYLQWQPSPV RHRAPLYKYS YASFSNIMSA WFQYEALKFV 240
  241 NFPTQVLAKS CKIIPVMLMG KIMSKAKYES YEYVTALLIS LGMIFFMSGS SDSSKASGVT 300
  301 TLTGIFLLSM YMVFDSFTAN WQGSLFKSYG MTPLQMMCGV NLFSSIFTGA SLSMQGGFMD 360
  361 SLAFATEHPK FVFDMVVLSV CSAVGQLFIY HTIDVFGPVV FTIIMTLRQA VAIMLSCFIY 420
  421 QHSISLLGIF GVLIVFVAIF LRVYCTQRLR AIRKRAEANK PKMAV