YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	abd-A-PB
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.73
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKFVFDSML PKYPQFQPFI SSHHLTTTPP NSSSAAVAAA LAAAAASASA SVSASSSSNN  60
   61 NSSNTIAGSN TSNTNNSSSS PSSSSNNNSN LNLSGGSLSP SHLSQHLGQS PHSPVSSSSP 120
  121 FQQHHPQVQQ QHLNHQQQQH LHHQQQQHHH QYSSLSAALQ LQQQQHHISK LAAAAVASHG 180
  181 HAHQQLLLTP PSAGNSQAGD SSCSPSPSAS GSSSLHRSLN DNSPGSASAS ASASAASSVA 240
  241 AAAAAAAAAA SSSFAIPTSK MYPYVSNHPS SHGGLSGMAG FTGLEDKSCS RYTDTVMNSY 300
  301 QSMSVPASAS AQFAQFYQHA TAAASAVSAA SAGAIGVDSL GNACTQPASG VMPGAGGAGG 360
  361 AGIADLPRYP WMTLTDWMGS PFERVVCGDF NGPNGCPRRR GRQTYTRFQT LELEKEFHFN 420
  421 HYLTRRRRIE IAHALCLTER QIKIWFQNRR MKLKKELRAV KEINEQARRD REEQEKMKAQ 480
  481 ETMKSAQQNK QVQQQQQQQQ QQQQQQQQQH QQQQQQPQDH HSIIAHNPGH LHHSVVGQND 540
  541 LKLGLGMGVG VGVGGIGPGI GGGLGGNLGM MSALDKSNHD LLKAVSKVNS

Type	Start	End	Confidence
Signal Peptide	1	54	0.97
N-region	1	45
H-region	46	51
C-region	52	54
Cleavage Site	54	55
Non-Cytoplasmic	55	542	0.78
Transmembrane Helix	543	568	0.58
Cytoplasmic	569	590	0.39