YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG8925-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	95	0.84
Transmembrane Helix	96	118	0.87
Non-Cytoplasmic	119	162	0.78
Transmembrane Helix	163	186	0.83
Cytoplasmic	187	306	0.76
Transmembrane Helix	307	329	0.87
Non-Cytoplasmic	330	335	0.69
Transmembrane Helix	336	357	0.90
Cytoplasmic	358	364	0.82
Transmembrane Helix	365	387	0.91
Non-Cytoplasmic	388	392	0.84
Transmembrane Helix	393	411	0.93
Cytoplasmic	412	501	0.97
Transmembrane Helix	502	524	0.87
Non-Cytoplasmic	525	530	0.87
Transmembrane Helix	531	554	0.89
Cytoplasmic	555	561	0.82
Transmembrane Helix	562	580	0.85
Non-Cytoplasmic	581	585	0.65
Transmembrane Helix	586	607	0.65
Cytoplasmic	608	616	0.54
Transmembrane Helix	617	638	0.92
Non-Cytoplasmic	639	645	0.59
Transmembrane Helix	646	666	0.94
Cytoplasmic	667	670	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGVLRRGSL NFDCVGGPRD KGRGSLEANL YGGYRETRPG PKTPEISVIA LDFRRYSEDL  60
   61 KKPPSAEQTE QPPSRDLSQD EDSDVISNFL GHYTRWSFLW TLLLCLFQLP TTFHLFMFVF 120
  121 QLTDVRSGEA SPMLSDGNME NLDLLHTKLL ERLLGCLTPW QSMWCALLSI FQAICTFHIF 180
  181 VYVFQIAPKD FWCARPENLM QMSVSEWRNI SQSSNGCLLL DVDYTQVTYE NNQLINWPEN 240
  241 ATDLGYRQCW HFEFSDVDGS AKTLVQEFDL VCGRDILSLV ETCFLVGAAA GAVLSGWISD 300
  301 RFGRRHTLMA FVTIQSVFGG ILAFSTSVAM FMSLRVIIGF ASMTVTVVSF VLVVELVSGK 360
  361 WRTVIGILNI LPVAISYVLS AGLAYLIRDW RHLQLAISWP WLIMLSIWFW LPESPRWLLA 420
  421 QGRLDELCGL IERAARMNGT SASLPSNYRK TLEAAVPRAV QSPPEATTSV ESKAVEADAP 480
  481 DPSASGHVNP LLVVFSAKYW RTTCLTLVIW LTLIIIYFGL TLHLSNLGGN IYINSAVAGT 540
  541 VEAISICISI LVVLKVGIRR SLIGYMLLPG LCCLATNLVS NQTGVIALAT IAKCLIGANN 600
  601 AIIPTYTAMQ YPTIVRNFGV GMGNLASGIA LILVPFLWKL EHIDPLLPLN VMGVCGLIGA 660
  661 VAISLMKDVV