YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG6125-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	98	0.94
Transmembrane Helix	99	123	0.84
Non-Cytoplasmic	124	130	0.76
Transmembrane Helix	131	161	0.71
Cytoplasmic	162	172	0.70
Transmembrane Helix	173	196	0.89
Non-Cytoplasmic	197	243	0.54
Transmembrane Helix	244	264	0.69
Cytoplasmic	265	281	0.78
Transmembrane Helix	282	305	0.88
Non-Cytoplasmic	306	350	0.72
Transmembrane Helix	351	374	0.82
Cytoplasmic	375	385	0.69
Transmembrane Helix	386	408	0.85
Non-Cytoplasmic	409	421	0.55
Transmembrane Helix	422	442	0.89
Cytoplasmic	443	447	0.55
Transmembrane Helix	448	467	0.89
Non-Cytoplasmic	468	480	0.59
Transmembrane Helix	481	510	0.83
Cytoplasmic	511	640	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRWPRKHTFG LWPKRNGRNR SSGEATGGQP QATVATIYDP GCEEKEKYTA QNGDDYYGQA  60
   61 HTVDLDVASK YSKPKEAHWL VRRIFFLSWI TSYDREQAFA DLIAGITLGL TIIPQSIAYA 120
  121 ALAGLSSEYG LYSAFIGSII YVFFGTIPQV SIGPTSLMAI LTLQFCADKP VQVVIVLAFL 180
  181 AGLVELAMGV FQLGFIVSFI PAPVTKAFTS GTALIVVFAQ IKNLLGVRIK GFPSIGDFFT 240
  241 NIRPTDAAMG ISCMVVLLSL RLLSQVNFKQ DTPVTRRLKK ILWYISISRN ALVVFFTGLL 300
  301 VFIWVKKSSI EAVPFALSSK VSSAMPTIKL PPFAFEYQNR TYVFTDILHE LGSGIVVVPI 360
  361 VAVLANVAIA KAFVKDGNLD ASQEMLTLGL CNIAGSFFSA MPTCGAFTRS AVSQASGVRT 420
  421 PMAGIYTGLI VLSALSILTP YFQYIPKASL SAVLIAAVIF MIDLAPVKEL WQTNKKDFFS 480
  481 WVGSFIICLV AGVELGLLFG IVLSMVFILL RLGNPKFEVT LKQHESTYYV HIVPQSDVYY 540
  541 TGVDALRSEL RGACRLYHND FPVVLDCARF MQFDATFSEM LISVAKEMAS HDVLLILQNM 600
  601 SLKVQQMLPV MGNVRFCQED SQLSSHLQVE KEAPVVEAKL