YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG5038-PA
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.76
Transmembrane Helix	12	35	0.82
Non-Cytoplasmic	36	91	0.78
Transmembrane Helix	92	118	0.66
Cytoplasmic	119	129	0.65
Transmembrane Helix	130	149	0.84
Non-Cytoplasmic	150	158	0.60
Transmembrane Helix	159	181	0.78
Cytoplasmic	182	233	0.46
Transmembrane Helix	234	255	0.87
Non-Cytoplasmic	256	284	0.58
Transmembrane Helix	285	306	0.78
Cytoplasmic	307	314	0.52
Transmembrane Helix	315	337	0.82
Non-Cytoplasmic	338	343	0.48
Transmembrane Helix	344	367	0.90
Cytoplasmic	368	371	0.51
Transmembrane Helix	372	391	0.93
Non-Cytoplasmic	392	398	0.53
Transmembrane Helix	399	419	0.81
Cytoplasmic	420	705	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDLVHKATL HSMVCQAILV LICLLCYGCG GLSGAKFVFD DTVAIVKNRD VNSLPTNWTA  60
   61 IFTHDFWGAS LLSSDSHKSF RPLTTLMFHC EYALLGLSAA HMKFLNLLLH CVNTLLMWRL 120
  121 IRSLYVPEVS TARWAILSAA LFAAHPIHTE AVSGVVGRAE LMFGMIHLLC LLLTVANTGR 180
  181 LGPQTGGLIM LLTAVGMLFK ESAVTIPMSC VLLDYFQNGY YHLRFKDQWS LLRTRISYLF 240
  241 YLLGTLGLLT ARLWWQDFET PTFKEVDNPV AHNEHVLTRG LSQQYLLVMN IWLMLCPHWL 300
  301 CYDWALGCVK LVTNIWDLRL QGVIGFYSIV LVALMNFRRL PGMMLALGLM IVPFLPASGI 360
  361 ICVGFVIAER TLYVPSIGFC LLSIYGFLYW YDSSTENTHW RTALRILLML LFSVMMVRTR 420
  421 QRATDWLNEE QLFKSALQVC PDNAKVHYNI ARLATDMGNN TKAFQHYHRA IELYPNYESA 480
  481 LMNLGNLYRE HGQLSTAEEY IRLALQAYPA FPAAWMNLGI VQSAQGKYDK ALASYEKALK 540
  541 YRANFAVCYY NMGNLYLEQK RYAEALHHWQ HAVALNPRQP KAWANILTML DNKGLQDDAL 600
  601 RISNQALQHL PNDVSILFIR ANVLGKLKHY TEAEAIYKRV IELEPHNTLY HTNLGVLYHR 660
  661 WDKTQEAIEA YRTAISISAA RATTARENLS KLLKRLEREA QVMQR