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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Ir87a-PA
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.51
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVDQSFVCG MSTPEQRFWL AALLFLLSQH SEVRGFGINL MKVQTEDKGQ EACILALLRK  60
   61 YFDSGDGLSG SVLCINRNYQ LPNIEEQLLR GVNNYENYPW SLLITNSREG PSPAKFLMNE 120
  121 KPQCYFLIVD NLEDEDLDEV FEHWKGMVNW NPLAQFVVYL ASLEETDEEM NDLMVELLLT 180
  181 FINKKIFNVN VIGQSEENQF YYGKTVFPYH PDNNCGNRVI SVELLDACDY PSEETDSEDE 240
  241 NDEDEGDGAQ EEDDGPQEEG DGEQEEEDGP QEQEDGDQAK GDEGQENDDG GLENKVENEF 300
  301 RIGASDDDEL ENDLSSNSSE PEAIIEEFFR AKFEDKFPRD LSGCPLTASF RPWEPYIFRN 360
  361 SEEQPVDDYY YGLQGDEDDY NDTSPNYGES DDESYADPGE DGDGAIPDTE TQSGGKLKLS 420
  421 GIEYEMVQTI AERLHVSIEM QGENSNLYHL FQQLIDGEIE MIVGGIDEDP SISQFVSSSI 480
  481 PYHQDELTWC VARAKRRHGF FNFVATFNAD AGFLIGIFVV TCSLVVWLAQ RVSGFQLRNL 540
  541 NGYFPTCLRV LGILLNQAIP AQDFPITLRQ LFALSFLMGF FFSNTYQSFL ISTLTTPRSS 600
  601 YQIHTLQEIY SNKMTVMGTS EHVRHLNKDG EIFKYIREKF QMCYNLVDCL NDAAQNEHIA 660
  661 VAVSRQHSFY NPRIQRDRLY CFDRRESLYV YLVTMLLPKK YHLLHQINPV IQHIIESGHM 720
  721 QKWARDLDMR RMIHEEITRV REDPFKALTF DQFRGAIAFS GGLLLVASCV FAFELCYVKY 780
  781 VYRTEKRERK TKKITKKVHN IKIQHD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle