YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG8630-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPNIIGSTF ILAETAIADG NNNKMAATPA ASAAPSAATP SQKVAKKAEA KTPENKPYEL  60
   61 EIVWRNVGLF VILHSMALYG LYLVFAESAY WELLPVYATM FLGGLGITAG VHRLWSHKAY 120
  121 KAKLPLRIFL MLCQSLAFQN SIWEWTRDHR VHHKFTDTHA DPHNSRRGFF FAHMGWLMCK 180
  181 KHPDVTSKGK QISMEDIEQD PVVMFQKKMY FVVMPICCFA LPMIFPYYVM GSSLRVCFFT 240
  241 CSMLRFCLSL HFTWLVNSAA HFYGMKPYDV NVSAMNNKLV STLTIGEGWH NYHHVFPWDY 300
  301 KAAELGTYSF NWTTAFIDVM AKIGQAYDLK FVSQEMVYKR VLRTGDGSHI AALLDANNNS 360
  361 AIPTSELVAH LDHEKEEHAI WGWDDKDISE EDRKGANVVN KESECKLD

Type	Start	End	Confidence
Cytoplasmic	1	62	0.98
Transmembrane Helix	63	86	0.87
Non-Cytoplasmic	87	92	0.89
Transmembrane Helix	93	115	0.90
Cytoplasmic	116	208	0.66
Transmembrane Helix	209	230	0.90
Non-Cytoplasmic	231	235	0.55
Transmembrane Helix	236	256	0.71
Cytoplasmic	257	408	0.61