YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	kar-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	79	0.98
Transmembrane Helix	80	103	0.86
Non-Cytoplasmic	104	123	0.89
Transmembrane Helix	124	145	0.90
Cytoplasmic	146	152	0.76
Transmembrane Helix	153	172	0.93
Non-Cytoplasmic	173	178	0.78
Transmembrane Helix	179	202	0.87
Cytoplasmic	203	209	0.78
Transmembrane Helix	210	232	0.85
Non-Cytoplasmic	233	243	0.83
Transmembrane Helix	244	265	0.90
Cytoplasmic	266	298	0.97
Transmembrane Helix	299	320	0.91
Non-Cytoplasmic	321	332	0.93
Transmembrane Helix	333	354	0.89
Cytoplasmic	355	362	0.86
Transmembrane Helix	363	383	0.88
Non-Cytoplasmic	384	387	0.67
Transmembrane Helix	388	412	0.83
Cytoplasmic	413	422	0.74
Transmembrane Helix	423	445	0.87
Non-Cytoplasmic	446	451	0.87
Transmembrane Helix	452	473	0.89
Cytoplasmic	474	553	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAENEPLNDL QSQVNGRILP AANGHTASAT NGLVHANGKD AMKPSAPVQN GNGNANGTHI  60
   61 EAPCCRDIHG KEPPDGGARA WLVMVSAFLC NGIIFGFINT YGVIHSLLTD RLTKLGDPEA 120
  121 SSKAALIGAL AIGTTFLFST MAGCLTDKIG LRLTTFAGGV LSAGGLLLSS FCTENIGALY 180
  181 FTYGIMFGLG AALAYTPTLA ILGHYFKRYL GKVSGFVTAG SSVFTVILPP CLDKLLGSYG 240
  241 LEGTLRIMSL VSAFIILCSF VYKPLHPPPE PPKKKPGRSR INLFLRSIIN VEIWKRKRFV 300
  301 IWALCVPLAL FGYFVPYVHM MQFVKTTFPG EDVNLPVMCI GITSGIGRLI FGVIADMPGV 360
  361 NRMYLQQLSL VSIGLVTLLL PLTNSYVILV SFTLVMGLFD GCFISLLGPI AYEICGPSGA 420
  421 TQAIGFLLGL SSIPLTVGPP VAGMIFDSTN SYTLPLILAG LPPLLGSSLL FLIKCVKEEE 480
  481 NGVSAPRAVV LANGDIEIAG NGHYRSAGTK SSAPLMGATN GINGSAPASP TIQSNGHVDN 540
  541 GTGKLAVTNG SAS