YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG6723-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.94
Transmembrane Helix	19	39	0.94
Cytoplasmic	40	55	0.91
Transmembrane Helix	56	77	0.94
Non-Cytoplasmic	78	85	0.86
Transmembrane Helix	86	110	0.90
Cytoplasmic	111	129	0.96
Transmembrane Helix	130	154	0.87
Non-Cytoplasmic	155	161	0.79
Transmembrane Helix	162	182	0.92
Cytoplasmic	183	188	0.77
Transmembrane Helix	189	211	0.83
Non-Cytoplasmic	212	241	0.91
Transmembrane Helix	242	262	0.87
Cytoplasmic	263	281	0.92
Transmembrane Helix	282	304	0.92
Non-Cytoplasmic	305	342	0.90
Transmembrane Helix	343	366	0.82
Cytoplasmic	367	386	0.92
Transmembrane Helix	387	407	0.97
Non-Cytoplasmic	408	419	0.75
Transmembrane Helix	420	441	0.77
Cytoplasmic	442	445	0.64
Transmembrane Helix	446	469	0.80
Non-Cytoplasmic	470	516	0.81
Transmembrane Helix	517	538	0.93
Cytoplasmic	539	587	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNIEEVLGE LQRFAWPDYV AFVSMFLLCI GIGIYFGFMN KSVSEDDYML GGRKMLVIPI  60
   61 AFSLVASFVS GITLLGLPTE VYSYGIQYLY VSCGVIGMGV VMGVFYLPVF HDLNITSTYE 120
  121 YLEVRFDRRL RLYGSVMFAI MNVAYLPIVI YVPALAFNQV TGIGVHTITP IVCIICVFYT 180
  181 SLGGLKAVVW TDVVQAISML GALCLVAIKG TRDIGGAGVV LERAWSSDRL EAPDLSIDPT 240
  241 VRHTFWCLFF GGIVYWTQTN AVSQNMIQRY LSLPSLGDAR KALCIFCVGV LILMALCGYN 300
  301 GLLIYATYQN CDPLTTKLAK ARDQLLPLFV MKTLGELPGM TGLFIAGVFS AALSSLSTCL 360
  361 NSMSAVVLED FVKPYVKKPL SSSAINWIMR LVVVGVGVLC VCLVYVVEHM GTVLQLTMSL 420
  421 EAITNGPLFG IFTIGLFLPW INGNSALVGG VMGVIAMSWV SLNAQWAIAS GAITYKTKPL 480
  481 NVEQCDYSFN VTTSLANTTH LGASAEDIFP LYRISYMWYT TFGASITIFV ALLGTFVFGK 540
  541 NNPNKVDPVL LTPCIRKFFA FGSEKHMDAF RPDIPLQHKL RNDEVAL