YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG8412-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	54	0.68
Transmembrane Helix	55	73	0.91
Non-Cytoplasmic	74	80	0.50
Transmembrane Helix	81	102	0.79
Cytoplasmic	103	134	0.51
Transmembrane Helix	135	153	0.78
Non-Cytoplasmic	154	160	0.79
Transmembrane Helix	161	188	0.78
Cytoplasmic	189	196	0.82
Transmembrane Helix	197	220	0.86
Non-Cytoplasmic	221	248	0.88
Transmembrane Helix	249	271	0.87
Cytoplasmic	272	276	0.77
Transmembrane Helix	277	295	0.88
Non-Cytoplasmic	296	300	0.81
Transmembrane Helix	301	322	0.92
Cytoplasmic	323	331	0.78
Transmembrane Helix	332	354	0.86
Non-Cytoplasmic	355	678	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDILIFVTAA AHLVYTPFTK VEESFNLQAM HDILYLRNNF TQYDHHDYPG VVPRTFIGPL  60
   61 VVSIISAPFV LLFETLSINK FWAQYVVRLV LAGAISVAWN SLRQAVTKIY GVEVRLWFTA 120
  121 ITITQFHFMF YMTRPLPNIF ALPIVLFAIA YWLRDQHKPF IICSGISILV FRSELALFLG 180
  181 ILLVVSLLRR KVSIDGLLKV ALPAGVCILA ATVLVDSFFW RRLLWPEGEV LWYNTVLNKS 240
  241 SNWGTSPFLW YFYSALPRAM GASLVLVPIG VALEPRIRPL VLSALLFVLL YSILPHKELR 300
  301 FIIYVFPVLN IAAACACQRI WMNSAKSTWH SFLALACGAH LLLNVFITLF LLVISGTNYP 360
  361 GGAALSRLHR LEAGTSNVSV HISNLAAQSG VSRFMEINNE WTYSKDETMN YTQADLVAYT 420
  421 HLLVEAKNKQ NTELWASLQN EFDTLEFIDC FNSIGIQYNS LLPVRIKTKP CIGILKKRPV 480
  481 APKEASKTKE KIAKTKTYPV EKETLLAPVK EFPKVIGDPK MKSRLQVDAD DDDGIVSTVE 540
  541 EMSLELETDT EPHAGAETIE TPLKEINFQE LRTLALGQAT KKSRAATKMK IRQIIEQHYR 600
  601 AKGKQIENDS AETQKTQGKA GLRQSVKSII KQEKIKEMIE QIATMDLTRI CDLERTSTKD 660
  661 CLKQVIDKID DSEGLKSK