YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG31100-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	53	0.99
Transmembrane Helix	54	78	0.83
Non-Cytoplasmic	79	97	0.95
Transmembrane Helix	98	119	0.93
Cytoplasmic	120	128	0.82
Transmembrane Helix	129	147	0.92
Non-Cytoplasmic	148	151	0.90
Transmembrane Helix	152	174	0.93
Cytoplasmic	175	183	0.87
Transmembrane Helix	184	205	0.93
Non-Cytoplasmic	206	212	0.84
Transmembrane Helix	213	237	0.83
Cytoplasmic	238	306	0.97
Transmembrane Helix	307	326	0.92
Non-Cytoplasmic	327	347	0.95
Transmembrane Helix	348	369	0.94
Cytoplasmic	370	376	0.80
Transmembrane Helix	377	399	0.89
Non-Cytoplasmic	400	527	0.93
Transmembrane Helix	528	548	0.92
Cytoplasmic	549	567	0.76
Transmembrane Helix	568	589	0.87
Non-Cytoplasmic	590	598	0.64
Transmembrane Helix	599	618	0.94
Cytoplasmic	619	716	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNGKAATAG ATAEKNGSLN DRPLFMQNGN GGRIATSDVE VSNFRRALPQ FLAVSIKNIL  60
   61 LFGYGMTLGF PTIVIPAIQG GEGRSETSGD ILLNKDEISW FSSINLICVP LGCLFSGLLT 120
  121 QPLGKRRAMQ FVNLPILAAW LMFHFATRTE HLYAALCLAG LGGGLMEAPV LTYVAEITEP 180
  181 KYRGILSALG TTCVITGVFI QFILGSLMDW RSVAAVSSAF PVITIIMLCF VPESPVWLIR 240
  241 EQRFREAVKS LQWLRGWVPE HMIEAEFNQL YDELITQKAI ELSADGIPPP GQRRTLGQRL 300
  301 RMWRKRSFLV PFLLVSFSFF TGHFSGKTPL QTYAVQIFHT LKAPMNKYHA TILLGVAEML 360
  361 ATILGVVLIH FTGKRPLVLV STVGTGLCFF GTATYAHFLS EVPGFTVNNV VVNASSIMPK 420
  421 EGILSQQNIS KIFETEQQAI RQETERFTTQ LPDIETTTLF DQEIYNRSRR DVVEMMTTDA 480
  481 PMDTTMWPEP SSSPEPIASS SLAPPSTSVK PPLVEELLLV VPKQEHNYLV WVPLILLLLS 540
  541 AFFSHLGIRM LPWILIGEVF PAEIRNSASG FAGGVGYIFG FLANKLFLLM LSALTLPGTF 600
  601 AFYASVAFFG TVVLYFTLPE TEGRTLGEIE AHFSKKSDVN LLRKQPSNKL PIKDEAQFPG 660
  661 NTINMQGNFQ VPITSTQQTK IIHLQQSDFT PRSQNGRTAG VGLSNPAFEE SNTTHL