YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Ir85a-PA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIQWLKHIL LLAILVNLAG TRENHIPLDL KKSSIVMVKM SQILCKARIK VLFVYFENQT  60
   61 SHEHTGQILK EVTKCDISNQ NTPLEAVKDD GILMYMVMIT TNISQPLELS LIRKKSAAKH 120
  121 RSHVFLLVRD ADTVSDAWMR ASFRQFWKIW LLNIVILYWR DGRLNAYRYN PFMDNYLIPV 180
  181 DNKPNEVPTL EQLFPKTIPN MQRKPLRMCI YKDDVRAIFW RQGTILGTDG LLAAYVAERL 240
  241 NATMMITRPH SYNNHNLSSD ICFLEVAKEY VDVAMNIRFL VPDTFRKQAE STVSHTRDDL 300
  301 CVIVPKAKTA PTFWNIFRSF GSLVWALILV SVLVANVFCY ILKSEVGRVP MQLFAGALTM 360
  361 PMTQIPPNHS IRLFLIFWLY FGLLICSAFK GNLTSMMVFQ PYLPDINQLG ALARSHYHII 420
  421 IRPRHVKHIQ HFLTLGHKHE SRIREQMLEV SDTQMYEMMR NNDIRFAYLE KYHIARFQVN 480
  481 SRVHMHLGRP LFHLMNSCLV PFHAVYIVPY GSPYLGFLDS LIRSSHEFGF ERYWDRIMNS 540
  541 AFIKSGVKVV NRRRGSGNDE PVVLKLQHFH AVFALWLVGI GMACIVLAWE HLTHNYNLAV 600
  601 TKRRD

Type	Start	End	Confidence
Signal Peptide	1	21	0.91
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	320	0.96
Transmembrane Helix	321	342	0.91
Cytoplasmic	343	348	0.81
Transmembrane Helix	349	365	0.76
Non-Cytoplasmic	366	373	0.59
Transmembrane Helix	374	393	0.90
Cytoplasmic	394	490	0.91
Transmembrane Helix	491	510	0.85
Non-Cytoplasmic	511	570	0.88
Transmembrane Helix	571	593	0.88
Cytoplasmic	594	605	0.89