YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Dhod-PA, Dhod-PD
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQDHLKNAK NATRRVGRLR SLGIVTVGGA ALVAGITAYK NQDQLFRTFV MPAVRLLPAE  60
   61 ASHQLAVLAC KYRLCPVSQY HDDQNLHTSF FGRMLSNPIG IAAGFDKNAE AVDGLQDLGF 120
  121 GFIEVGTVTP AAQEGNPKPR VFRLTEDKAI INRYGFNSDG HQAVLQRLRL LRKKENFNGV 180
  181 VGVNLGRNKT TMSPIADYVQ GVRVFGPVAD YLVINVSSPN TKGLRDMQSK EKLRELLEQV 240
  241 NDTKSSLDKN KNVPILLKLS PDLSLDDMKD IVWVIKRKKS RVDGLIVSNT TVSRENIEKN 300
  301 KLAEETGGLS GPPLKARSTE MIAQMYQLTD GKIPIIGVGG VASGYDAYEK IEAGASYVQI 360
  361 YTALVYEGPA LVEDIKAELS ALITRLGHTN VADVVGTNSK FYLPK

Type	Start	End	Confidence
Cytoplasmic	1	18	0.93
Transmembrane Helix	19	39	0.93
Non-Cytoplasmic	40	405	0.99