YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG8007-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNRFFFSFT GYFPLGSEHC LTWICLDVLF CTASIMHLCT ISVDRYLSLR YPMRFGRNKT  60
   61 RRRVTLKIVF VWLLSIAMSL PLSLMYSKNH ASVLVNGTCQ IPDPVYKLVG SIVCFYIPLG 120
  121 VMLLTYCLTV RLLARQRQNL GGGQQTAAAT PGWASGWLGQ APALGGPAGA APATVGSTLS 180
  181 PHSAHNQGSS LTVQSDGSGY LAAPGTPCPG RRKLSISKTA SVVTWDSSRH RRRGSSFGGV 240
  241 RTSLLLTPTK TATTSNSSTP LRRSATLRSH QNMNYQGAGE CGGKTRTTTS SPCMLQRQQT 300
  301 VRSHHSRNSS VISRNSSRHG RIIRLEQKAT KVLGVVFFTF VILWSPFFVL NLLPTVCAEC 360
  361 EERISHWVFD VVTWLGYASS MVNPIFYTIF NKVFRQAFKK VLLCRYSSTS AWRPSR

Type	Start	End	Confidence
Non-Cytoplasmic	1	19	0.92
Transmembrane Helix	20	43	0.90
Cytoplasmic	44	63	0.95
Transmembrane Helix	64	85	0.94
Non-Cytoplasmic	86	107	0.92
Transmembrane Helix	108	130	0.89
Cytoplasmic	131	328	0.97
Transmembrane Helix	329	350	0.88
Non-Cytoplasmic	351	370	0.88
Transmembrane Helix	371	390	0.88
Cytoplasmic	391	416	0.90