YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0304805, CG1...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.87
Transmembrane Helix	35	57	0.89
Cytoplasmic	58	63	0.92
Transmembrane Helix	64	83	0.92
Non-Cytoplasmic	84	89	0.84
Transmembrane Helix	90	112	0.91
Cytoplasmic	113	120	0.86
Transmembrane Helix	121	142	0.89
Non-Cytoplasmic	143	146	0.74
Transmembrane Helix	147	169	0.89
Cytoplasmic	170	240	0.97
Transmembrane Helix	241	263	0.91
Non-Cytoplasmic	264	280	0.91
Transmembrane Helix	281	301	0.93
Cytoplasmic	302	307	0.91
Transmembrane Helix	308	331	0.88
Non-Cytoplasmic	332	341	0.91
Transmembrane Helix	342	367	0.91
Cytoplasmic	368	376	0.86
Transmembrane Helix	377	397	0.93
Non-Cytoplasmic	398	405	0.82
Transmembrane Helix	406	428	0.94
Cytoplasmic	429	438	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLTHGIAVG WLSPSLRLLA SDESPLGDPL TITQASWVGS LIGLGSLTGN IIFGLLLDRL  60
   61 GRKVCMYFLA IPNMIYWILI YSAQDVTYLY AGRFLAGMSG GGCYVVLPIF IAEIADNSVR 120
  121 GALSSMAMMY VSIGMMVGFT LASYLPYYLM PCIIVALPVV FMLSVIGLSE TPQYLLRRGR 180
  181 DDQAEKSFYF YKNLTPPTSS DKEASQHDAA KIEFDTFRLQ VLSGGVTESI SWRDFINVPT 240
  241 LKIFGLIFVL IICNQLSGSF AIFNYTSHIF AELGNNLDPN TSTIVVGAAQ LVGIFSAVVL 300
  301 VDRLGRRVLL LTSMGGMGLG ELAIALLKCF ASDEFLNQNG WLPLVIMCLV ACIASLGVIA 360
  361 LIFIIIIELL PAKIRSIGTS LSMATFSGFI FVALKIYPTM IYDQGLAATM FMSAGMCLFG 420
  421 FIVLGLFLPE TKGKLMTH