YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Sodh-1-PA, FBpp0...
Protein type:	Transmembrane
Type Confidence:	0.65
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKDNLTAVL HGIEDMRLEQ RPIPEIADDE VLLAMDSVGI CGSDVHYLAH GRIGDFVLTK  60
   61 PMIIGHESAG VVAKLGKKVT TLKVGDRVAI EPGVPCRKCD HCKQGKYNLC PGMVFCATPP 120
  121 YDGNLTRYYK HAADFCFKLP DHVTMEEGAL LEPLSVGVHA CKRAEVTLGS KVLILGAGPI 180
  181 GLVTLMAAQA MGASEILITD LVQQRLDVAK ELGATHTLLL KRDQTAEETA VLVQKTMGGQ 240
  241 PDKSIDCCGA ESSARLAIFA TRSGGIVVVV GMGAAEIKLP LINALAREVD IRGVFRYCND 300
  301 YAAALALVAS GKVNVKRLVT HHFDIKETAK AFETSRKGLG GAIKVMIHVQ PRDTNNPRKF 360
  361

Type	Start	End	Confidence
Cytoplasmic	1	171	0.61
Transmembrane Helix	172	193	0.57
Non-Cytoplasmic	194	360	0.87