YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG1208-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	39	0.98
Transmembrane Helix	40	60	0.93
Non-Cytoplasmic	61	100	0.95
Transmembrane Helix	101	121	0.91
Cytoplasmic	122	127	0.89
Transmembrane Helix	128	147	0.89
Non-Cytoplasmic	148	154	0.62
Transmembrane Helix	155	176	0.90
Cytoplasmic	177	186	0.84
Transmembrane Helix	187	207	0.92
Non-Cytoplasmic	208	215	0.65
Transmembrane Helix	216	240	0.83
Cytoplasmic	241	294	0.98
Transmembrane Helix	295	316	0.92
Non-Cytoplasmic	317	330	0.77
Transmembrane Helix	331	351	0.91
Cytoplasmic	352	357	0.95
Transmembrane Helix	358	380	0.91
Non-Cytoplasmic	381	389	0.92
Transmembrane Helix	390	412	0.91
Cytoplasmic	413	427	0.86
Transmembrane Helix	428	450	0.91
Non-Cytoplasmic	451	457	0.85
Transmembrane Helix	458	478	0.91
Cytoplasmic	479	496	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVATEELKTT VSQEDGDSRN PITYDLLQEN QSKTSKTRQY VAAMIICLGA VAAGTALSWT  60
   61 SPVFPQISAG NESSFNSTTG GISNSTSNEN DIRLTDSQKT LVGSMLPFGA LFGALPSGYI 120
  121 ADRIGRRYTA MVMDIPFILA WITLSFANSV GWLYLGRFLI GIATGSFCVV APMYISEIAE 180
  181 TSIRGSLGTL FQLLLTIGIL FIYVVGALVS WKTLSLLCLI IPILLLVGLF IVPETPVYLL 240
  241 KNGKRSEANR ALKWLWGDYC NTSNAIQAIQ NDLDQTGVDA SVKDLFSNRA SRNGMVISVL 300
  301 LMVFQQFSGI NAVIFFMNEI FESSSTLNPN VCTIVVGVVQ VIMTLASSLL IEKAGRKILL 360
  361 IFSSTIMTVC LAMLGAYNTI NRHTDLSQSI GWLPLLCIVL FIVSFSVGYG PIPWMMMGEL 420
  421 FMPDVKGIAV SLSVMMNWVC VSLVTWLFGV LNAGGADVPF WFFSAWMGVA TAYVAIALQE 480
  481 TKGKSASQIQ SWLSGR