YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: 5-HT2-PB
Protein type: Transmembrane
Type Confidence: 0.71
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMQSYSGRG PSTGTSETAT ATAAVASASA SDTAATFTLR HFNCRLEEAD WPGPRQPFID  60
   61 CEGSHTNSTS YTPSSLPTSK NLIEGPNNTF QCARQAIDEA EHNAFYSCDG ESPLSENCTL 120
  121 RLKARLLRWP YEAYEHIRLA INGALSDYAS DKLSDSSSCD EGGMVLQCKL GQAHELLLCH 180
  181 LQQLEREPLR EVGSAEESFS NDSLLQAFQI ELGAERDGLW SFLNLSELME PDHGFLGIMN 240
  241 VTNTSLDMFL PNLTALNTTS TASTADMATE FAVTKSFLDY SPHGYDFLFL FVVFFIFAGG 300
  301 LGNILVCLAV ALDRKLQNVT NYFLFSLAIA DLLVSLFVMP MGAIPAFLGY WPLGFTWCNI 360
  361 YVTCDVLACS SSILHMCFIS LGRYMGIRNP LGSRHRSTKR LTGIKIAIVW VMAMMVSSSI 420
  421 TVLGLVNEKN IMPEPNICVI NNRAFFVFGS LVAFYIPMLM MVTTYALTIP LLRKKARFAA 480
  481 EHPESELFRR LGGRFTLRPQ HSQQQLQMFS SFSGSNNKFL SMGDGNRNFN TEGEMEEGGA 540
  541 PSRRSGVEPA ERPLMQQRTA SSRSMGTVSF RNVVNGTSGA AGSGRRTTGT AHSSFRFSGA 600
  601 GIFRHSSSSP ASSCHSTSTS RSSSFWRKHG GYPNLMDRLA IHLRLSLVPP SSHPNRRASV 660
  661 RVTISQPQLG YPTNVGGNGG RTVGATEVGA GGNGSSAGRT SNSSLGGTSL MKIATIQGPI 720
  721 LNQSQAAGGN HMVQKVKPTA LKPEEPQRNK VRPFKFAFNR VATPTLNLRF LNNRSKRNSL 780
  781 SANAVATEQK ATKVLGLVFF TFVLCWSPFF ILNIIFAACP ECQVPEHVVN TCLWLGYVSS 840
  841 TINPIIYTIF NRTFRAAFIR LLKCNCKRSG RPLRYRSVTE GRGALSLCAP SALPLAISFQ 900
  901 GAPLMTPSTA NATPMSEFRA SCRTVTDDEC 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle