YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	slif-PA, slif-PB...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.95
Transmembrane Helix	29	50	0.89
Non-Cytoplasmic	51	59	0.69
Transmembrane Helix	60	80	0.93
Cytoplasmic	81	92	0.81
Transmembrane Helix	93	114	0.89
Non-Cytoplasmic	115	156	0.94
Transmembrane Helix	157	177	0.90
Cytoplasmic	178	184	0.82
Transmembrane Helix	185	204	0.94
Non-Cytoplasmic	205	226	0.89
Transmembrane Helix	227	249	0.86
Cytoplasmic	250	265	0.86
Transmembrane Helix	266	285	0.91
Non-Cytoplasmic	286	316	0.85
Transmembrane Helix	317	339	0.90
Cytoplasmic	340	360	0.88
Transmembrane Helix	361	383	0.90
Non-Cytoplasmic	384	390	0.82
Transmembrane Helix	391	412	0.91
Cytoplasmic	413	446	0.98
Transmembrane Helix	447	467	0.92
Non-Cytoplasmic	468	475	0.79
Transmembrane Helix	476	497	0.93
Cytoplasmic	498	506	0.82
Transmembrane Helix	507	527	0.93
Non-Cytoplasmic	528	534	0.81
Transmembrane Helix	535	554	0.94
Cytoplasmic	555	604	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNLWKALTR RKTEDVNEGE SQLARVLNLF DLTALGVGST LGLGVYVLAG QVAFNIAGPA  60
   61 VTISFLIAAI ASAFAGICYA EFAARVPKAG SAYVYSYVTI GEFVAFTIGW NLILEYVIGT 120
  121 ASVARGLSGY FDSLINNNMS KALNESMHID VDFLGDYPDF LSFGMVLLLA AILAFGAKES 180
  181 SFLNNIFTTV NLVTIAIVLV AGAMNANVDN WRIPKKDVPE GFGTGGFMPF GIAGVMAGAA 240
  241 KCFYGFVGFD CIATTGEEAI NPKRNIPLSI VVSLIIIFLS YFGVSTVLTM MLPYYKQDKD 300
  301 APFPHAFDSV EWYTIKWIVT IGAVFALCTS LLGAMFPLPR ILYAMGKDGI LFKRLSTVNS 360
  361 YTKTPLLATI VSGIFASIMA MLFNLDQLVD MMSIGTLLAY TIVAICVLVL RYQDEEMTKL 420
  421 VSVKAPNVFR QFFNGNSFRE PNSMTSSITK VGIVVFAIFC LVWCSLQKVF DLDSTGGIVA 480
  481 LSLVGAVLIL ICVVIGMQPV STIELTFKVP LVPFVPCLSV FANLYLMFQL DLNTWIRFLI 540
  541 WIVIGYVIYF CYGMRNSTQI SRSRSHAEVA ASALQNQGQH VNPGFEPDYK VENGGRPYEF 600
  601 SEKL