YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|220951874
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVNLQASC SSGLASEDDA NVGSQIGAAE RLERPPRRQQ QRNNYGSSNQ DQPDAAILAV  60
   61 PNVVMREPCG SRPSRLTGGG GGSGGPPTNE MEEEQGLKYG AQHVIKLFVP VSLCMLVVVA 120
  121 TINSISFYNS TDVYLLYTPF HEQSPEPSVK FWSALANSLI LMSVVVVMTF LLIVLYKKRC 180
  181 YRIIHGWLIL SSFMLLFIFT YLYLEELLRA YNIPMDYPTA LLIMWNFGVV GMMSIHWQGP 240
  241 LRLQQGYLIF VAALMALVFI KYLPEWTAWA VLAAISIWDL IAVLSPRGPL RILVETAQER 300
  301 NEQIFPALIY SSTVVYALVN TVTPQQSQAT ASSSPSSSNS TTTTRATQNS LASPEAAAAS 360
  361 GQRTGNSHPR QNQRDDGSVL ATEGMPLVTF KSNLRGNAEA AGFTQEWSAN LSERVARRQI 420
  421 EVQSTQSGNA QRSNEYRTVT APDQNHPDGQ EERGIKLGLG DFIFYSVLVG KASSYGDWTT 480
  481 TIACFVAILI GLCLTLLLLA IWRKALPALP ISITFGLIFC FATSAVVKPF MEDLSAKQVF 540
  541 I

Type	Start	End	Confidence
Cytoplasmic	1	106	0.98
Transmembrane Helix	107	127	0.93
Non-Cytoplasmic	128	153	0.90
Transmembrane Helix	154	175	0.94
Cytoplasmic	176	182	0.90
Transmembrane Helix	183	204	0.93
Non-Cytoplasmic	205	216	0.89
Transmembrane Helix	217	237	0.89
Cytoplasmic	238	245	0.75
Transmembrane Helix	246	263	0.92
Non-Cytoplasmic	264	267	0.78
Transmembrane Helix	268	288	0.87
Cytoplasmic	289	477	0.83
Transmembrane Helix	478	501	0.90
Non-Cytoplasmic	502	507	0.52
Transmembrane Helix	508	530	0.87
Cytoplasmic	531	541	0.64